Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00643 ATGGATTCTAATACCCATCAGAGTTATCAACTTCAACAACAGAACCAACCCAATTCAGGGTTGCTTCGTTTGCGTTCTGCACCAAGTTCATTTCTTTCAAATCTCACACCTTCTGCTAATAAGGGTACCCTTTGGGAGGGTTCTGAATCAGAGAGATTGATTTCTAGATTTGCGAGTTATTGTACTGATAGCAGCAACGATAGTGCTGCTTCTCCTAGCTTTCAAGAGTTTGAAGAGAATAAGTCTTCTTCTAAGGCTCTGAGCGGCATGAATTCTCAGCATCAGGGCTATGGTGGTGGGTTGCCACCTCACTATCCGAGACATGGTTCTGTTACTTCAAGTGCTGCCTTGGATGGTTCCTATGGGTTGGTTGGTTCAATAGGAATGGATCATGAAGCACCCCACAAGAGCTTTGGTTCCCATCTTCTTAGGCAGGGTAGTTCCCCTGCTAGTCTTTTATCCAACAACATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGTGGTGAATGGAAGTAATGGTGAACCTTGTCCATCTATTAACAGATTGAAGAGTCAGATTAGCTTCTCATCTAGAAGTGCTTCTTCCTTGGGAATGTTGTCACAGATCTCTGAAATAGAGAGTGAAGACATTGAGGCAACTAGCCCTGATGATGGAAGACAGGGAGGTGGCAATGATGATGCTCAACATTTTGGCCATGGATTCCCTTATGGTTCTTGGAATGATACTCCTCAACTCTCACAGAATCTCAGTGGATTGAAAAGAGGGCGAAGTGGTAATGAAAAGATGTTTTCTGATGTTCAGAATGGTGAGCTAGGAAATCAAGTTCGTACATTGTCACATCACTTGAGTTTACCAAAATCTTCAGCTGAGATGGTTGCTATGGAGAAGTTGCTTCAGTTTCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGGAGCATTGCCGAAAGGGTGAGAAGAACTCGGATTAGTGAAAGAATGAGGAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACTAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAACGGGCAAATTGCAAATGCATGAATATGCAGAAGGCAGATACAATACACAAAGTATGCAAGGAAGGCTAG 1212 0.4266 MDSNTHQSYQLQQQNQPNSGLLRLRSAPSSFLSNLTPSANKGTLWEGSESERLISRFASYCTDSSNDSAASPSFQEFEENKSSSKALSGMNSQHQGYGGGLPPHYPRHGSVTSSAALDGSYGLVGSIGMDHEAPHKSFGSHLLRQGSSPASLLSNNISFQNGFATMKGVGNYGVVNGSNGEPCPSINRLKSQISFSSRSASSLGMLSQISEIESEDIEATSPDDGRQGGGNDDAQHFGHGFPYGSWNDTPQLSQNLSGLKRGRSGNEKMFSDVQNGELGNQVRTLSHHLSLPKSSAEMVAMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCMNMQKADTIHKVCKEG* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00643 403 SMART finulus 327 377 IPR011598 GO:0046983
Rops6g00643 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 371 IPR011598 GO:0046983
Rops6g00643 403 MobiDBLite consensus disorder prediction 216 271 - -
Rops6g00643 403 CDD bHLH_AtbHLH_like 326 379 IPR045239 -
Rops6g00643 403 MobiDBLite consensus disorder prediction 246 261 - -
Rops6g00643 403 Pfam Helix-loop-helix DNA-binding domain 326 372 IPR011598 GO:0046983
Rops6g00643 403 Gene3D - 322 397 IPR036638 GO:0046983
Rops6g00643 403 MobiDBLite consensus disorder prediction 67 112 - -
Rops6g00643 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 389 IPR036638 GO:0046983
Rops6g00643 403 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 391 - -
Rops6g00643 403 MobiDBLite consensus disorder prediction 1 25 - -
Rops6g00643 403 Coils Coil 368 388 - -
Rops6g00643 403 MobiDBLite consensus disorder prediction 67 95 - -
Rops6g00643 403 FunFam Transcription factor bHLH130 family 322 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00643 Rops-Chr6 16811196 16814431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00643 1 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.454 2.46e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g00643 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00643 - - gmx:100819605 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00643 6 16811196 16814431 Rops6g00643 6 16811196 16814431 ECH
Rops6g00643 6 16811196 16814431 Rops6g03619 6 61206049 61210506 ECH
Rops8g02859 8 64341921 64344684 Rops6g00643 6 16811196 16814431 PCT