Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00642 ATGTTTCACATCTCTTGCATTATTCTTGTTCTTCTTCTTTTTGTTCCCTTCACTTTCACTCTCAACTCAGACGGTCTCTCTTTGTTAGCACTAAAAGCCGCCATAGATGTGGACCCCACTGGGGTTCTTAACTCGTGGTCCGACTCAGTCTCCACACCGTGCAAGTGGCAAGGAGTTTCATGCATCAATGACCGAGTCACCCAACTCGTTCTCCCTTCAAAGGGGTTAACCGGTTACATTCCCTCTGCACTAGGTTCCCTCACTGAACTAAAACGACTTAGCCTTCAACATAACAACTTCACCAGTGCAATCCCTTCAAGTCTCTTCAACGCAACAAAGCTTGTCGTTTTGGACCTCTCATATAACTCACTCTATGGTTCTCTTCCATTTTCAGTTTCCACTCTCAAGAATCTCATGCATTTGGATTTGTCTTTCAATTTTCTCAACGGTTCGATCCCTGAAGAACTTTCTATACTCGCCGGAACTTTGAACCTTTCGCATAATAGATTCTCCGGCGGGGTTCCGGCGTCGCTTGGGGACCTTCCGGTGGCGGTGAGTTTGGATCTCAGTGATAACAACCTCACAGGAGAAATCCCTCAGGTGGGGTCACTCCTCAACCAGGGCCCCACCGCTTTTTCTGGTAACCCCGGACTTTGCGGGTTTCCGTTACGGAACCCGTGCCCGGAAGCCCGAAAGGTTCCGGATATTTTTCCGAAAGATGAGGACCCGGAAAACCCGAACCCGAAAGAAGTTCGAACTGGGTCGGGTCAGGAGGAGAAGATCCGAGGTGGTTCGTTTGTTATTGCTGCAGTTATCTCCGGCGGGTCGGTTATGGCTGTGGTGGTTTTGCTGTCGGCGTGGCTGCTCCGGCGACGGCGGAGGTTGGTCTCCGGCGAGGGTGAGTTTGTGAAGGGGAAGATTGATGGTGAGGTGGGTTCCGGGGAGGAACAGAAGGGTAGGTTTGTGGTGGTGGATGAAGGGTTTGGGTTGGAATTGGAGGATTTGTTGAGGGCTTCAGCTTATGTTGTGGGTAAGAGTAGGAGTGGGATTGTGTACAAGGTTGTCGGTGTCGGAAAAGGGTCGTTACCGGCGGCGAATGTGGTGGCTGTTCGGCGGCTGAGTGAGGGTGATGATGCCATGTTGAGGTTTAAGGAGTTTGAGGCTGAGGTGGAGGCTATTGGGAGGGTGAGACACCCAAATGTTGTGGCTTTGAGAGCTTATTACTATGCAACTGATGAGAAATTGCTCATCACTGATTTCATCCGCAATGGAAGCTTGCACACTGCATTGCATGGTGGGCCTTCCAATTCATTGCCACCATTATCATGGGCAACAAGGTTAAGAATTGCTCAGGGAGTTGCAAGGGGATTGATGTACATACATGAGTTTAGTGGTAGGAAGTATGTCCATGGCAACCTAAAATCGACGAAAATACTATTGGATGAAGATCTCGATCCTTACATATCCGGTTTTGGACTTAATCGTCTTGGTTTGGGTGCCTTAAAGTCTACCACAACATTGTCACATAAATGGCAGAACTCAAACCAGTCTATTGTAACCTCAGCAATAGGTGCAAAAGTTGCAGCTTCCTCTAACAGCTACTTGGCACCTGAGGTGCGCATGGCGGGTGGAAAGTTCAGTCAGAAATGTGATGTGTATTCTTTTGGTATAGTGCTGCTAGAACTTTTGACAGGTCAGCTGCCGGATTTAGGACCGGAAAATGATGGCAAGGAGCTAGAGAGTTTTGTGAGGAAAGCATTCAAGGAGGAACAACCCTTGTCAGAGATTATAGACCGAGCACTTTTGCCTGAGGTGAATGCTAAAAAGCAAGTTGTTGCAGCATTTCATGTTGCATTGAACTGCACAGAACTTGATCCAGAATTGCGACCAAGAATGAGAACCGTGTCTGAGAGCCTTGACCGCATCAAAATACAGTGA 1938 0.4835 MFHISCIILVLLLFVPFTFTLNSDGLSLLALKAAIDVDPTGVLNSWSDSVSTPCKWQGVSCINDRVTQLVLPSKGLTGYIPSALGSLTELKRLSLQHNNFTSAIPSSLFNATKLVVLDLSYNSLYGSLPFSVSTLKNLMHLDLSFNFLNGSIPEELSILAGTLNLSHNRFSGGVPASLGDLPVAVSLDLSDNNLTGEIPQVGSLLNQGPTAFSGNPGLCGFPLRNPCPEARKVPDIFPKDEDPENPNPKEVRTGSGQEEKIRGGSFVIAAVISGGSVMAVVVLLSAWLLRRRRRLVSGEGEFVKGKIDGEVGSGEEQKGRFVVVDEGFGLELEDLLRASAYVVGKSRSGIVYKVVGVGKGSLPAANVVAVRRLSEGDDAMLRFKEFEAEVEAIGRVRHPNVVALRAYYYATDEKLLITDFIRNGSLHTALHGGPSNSLPPLSWATRLRIAQGVARGLMYIHEFSGRKYVHGNLKSTKILLDEDLDPYISGFGLNRLGLGALKSTTTLSHKWQNSNQSIVTSAIGAKVAASSNSYLAPEVRMAGGKFSQKCDVYSFGIVLLELLTGQLPDLGPENDGKELESFVRKAFKEEQPLSEIIDRALLPEVNAKKQVVAAFHVALNCTELDPELRPRMRTVSESLDRIKIQ* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00642 645 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Rops6g00642 645 MobiDBLite consensus disorder prediction 235 257 - -
Rops6g00642 645 SUPERFAMILY Protein kinase-like (PK-like) 342 639 IPR011009 -
Rops6g00642 645 Gene3D Ribonuclease Inhibitor 161 227 IPR032675 -
Rops6g00642 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 643 IPR046959 -
Rops6g00642 645 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Rops6g00642 645 FunFam Leucine-rich repeat receptor-like protein kinase 137 229 - -
Rops6g00642 645 Pfam Protein tyrosine and serine/threonine kinase 344 639 IPR001245 GO:0004672|GO:0006468
Rops6g00642 645 MobiDBLite consensus disorder prediction 235 258 - -
Rops6g00642 645 Gene3D Ribonuclease Inhibitor 21 158 IPR032675 -
Rops6g00642 645 SUPERFAMILY L domain-like 22 224 - -
Rops6g00642 645 Pfam Leucine rich repeat 65 124 IPR001611 GO:0005515
Rops6g00642 645 ProSiteProfiles Protein kinase domain profile. 337 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00642 645 Gene3D Transferase(Phosphotransferase) domain 1 421 645 - -
Rops6g00642 645 FunFam Leucine-rich repeat receptor-like kinase 26 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00642 Rops-Chr6 16781473 16785266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00642 21 643 Receptor kinase-like Gene Family AT3G57830 57.812 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops6g00642 PK_Tyr_Ser-Thr 3.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00642 - - tpra:123899429 900.197