Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00639 ATGGAACAAACCACACTCGAGTCCATTCAGTTCAACGAAGAAATCCAGGGAATTATGACTCCGGCGCCGGAAACAGCTAGCTCCTTCACCGCATTACTCGAGCTTCCGCCGACGCAGGCCGTGGAGCTCCTTCACTCGCCGGAACATGCCGGAAAACCGCCTCGCAACGTCAGCAATCCGAAATCCTATCCGTTGAGCTCCTTCGGTGGCGGCAGTACCAGCAATTTGACCTTTCCTTCTAACGCCGCGTTGATCGAACGCGCCGCGAGGTTCTCCGTGTTCGCCGGAGAGAACTCGCAGCCGACGGAGGTGAAGAACGAGTTACCGGAGACCGATTCGAACCCGAGTTTGGATCAAGGTGGTGGTTGTGTCTCTGATCCCACCGTCGAGAACAAGAACCCTAAGAGCGCCAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCGTCGAAGAAGTGCAAGAGCATCGCCGATGAGAACTCCAGCGACGGTGAGAAGCTTCCGTATGTTCACGTCCGTGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTGGATAAAATCATCAACCATGTGCAGTCTCTACAGCATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTTAACCCAATAATTGATTTCAACCTTGACAGCATATTGGCTACTGAAGGAGTGTCTTTAATGGACAGTAACTTCCCTACCACAGTTGCACCCGGCGTGTGGCCAGAAATCCCACACAATGGAAACAGACAACAATATCATCAACTGTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGACAACCCCAATTTCATGACTCCAGAAAACTCACTTCTGAGTTACAACTCATCGGCTAATTCAGTATCTCTGCACTCAAATCAGTTGAAGATGGAGCTCTGA 1017 0.5005 MEQTTLESIQFNEEIQGIMTPAPETASSFTALLELPPTQAVELLHSPEHAGKPPRNVSNPKSYPLSSFGGGSTSNLTFPSNAALIERAARFSVFAGENSQPTEVKNELPETDSNPSLDQGGGCVSDPTVENKNPKSAKRKEREKKVKVSSKKCKSIADENSSDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPIIDFNLDSILATEGVSLMDSNFPTTVAPGVWPEIPHNGNRQQYHQLWQFDAFHQPLWGREEDNPNFMTPENSLLSYNSSANSVSLHSNQLKMEL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00639 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 228 IPR011598 GO:0046983
Rops6g00639 338 MobiDBLite consensus disorder prediction 148 163 - -
Rops6g00639 338 CDD bHLH_AtBPE_like 168 253 - -
Rops6g00639 338 Gene3D - 175 246 IPR036638 GO:0046983
Rops6g00639 338 MobiDBLite consensus disorder prediction 40 71 - -
Rops6g00639 338 MobiDBLite consensus disorder prediction 97 121 - -
Rops6g00639 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 247 IPR036638 GO:0046983
Rops6g00639 338 MobiDBLite consensus disorder prediction 97 163 - -
Rops6g00639 338 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 79 321 IPR024097 GO:0006355
Rops6g00639 338 SMART finulus 184 234 IPR011598 GO:0046983
Rops6g00639 338 Pfam Helix-loop-helix DNA-binding domain 182 229 IPR011598 GO:0046983
Rops6g00639 338 FunFam transcription factor bHLH48-like isoform X1 175 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00639 Rops-Chr6 16661689 16668360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00639 2 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.919 1.08e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g00639 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00639 - - psat:127091567 507.294