Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00625 ATGGCCACATTCTGTATATACCTATTCCTTCTTCTCTCTATGACCTTCACAATCTTGAACCTCACTTCTTCTTCATCAGAGGCTGATATCCTTTTATCATTTAAAGCCTTCATTGAAGACCCCAGGAAGGCCTTGTCTAGCTGGTCCAACACTACACACTATTGTAACTGGACAGGTATATCTTGCTCCACCACAACTTCAATGTCAGTAACTTCTGTTAACCTTCAAAGCCAAAACCTCTCTGGGGTTATCTCATCTTCAATATGTGACCTCCCAAATCTGTCTTACCTCAGCCTTGCTAACAACATGTTCAACCACTCCATAGTATCTTTTCTTCATCTTGCTCAGTGTAGTTCATTGGTAAACTTGAACCTCAGTAACAACCTCATTTGGGGTCCCATCCCATTGCAGATTTCACAGTTTGTGTCCTTGAGAGTGCTTGATCTTAGCAGGAACTACATAGAAGGAAACATCCCAGAAAGCTTAGGCTCATTGAAGAACCTAGAAGTTTTTAACATGGGGAGTAACTTGCTTTCTGGTAGTGTGCCTTCTATCTTTGGGAGTTTCACTGAGCTTGTTGTTCTTGATTTGTCTCAGAATCCAAATTTGGTGATTGAGATTCCAGAGGATATTGGCCAACTTAGAAGCCTCAAGCAACTTCTTTTGCAGAGTTCTGGTTTTCAAGGTGGAATTCCAGATTCTCTGGCAGGGCTTAGTAGTTTGGTGCATTTGGATCTATCTGAGAACAATCTCACTGGTGGGGTTCCTCTGGCTCTGGCCTCTTCTCTCAGGAGCCTGGTCTCTTTTGATGTTTCACAAAACAAACTTGTGGGGCCATTTCCAAATGGCATTTGTAAAGGGAAGGGGATTATAAATCTCAGTCTACACACAAATAGCTTCACTGGTTCACTCAGCAACTCCATTGCTGAGTGTAAGAATCTTGAGAGATTTCAAGTTCAGAACAATGGATTTTCTGGAGATTTCCCTGTTGCATTATGGTCATTACCCAAAATGAAGCTTGTCAGAGCTGAAAACAATAGATTCTCAGGACAAATACCTGAGTCCATATCAAGTGCTGTCCAGTTAGAACAAATTCAGCTTGACTATAACAACTTCTCTGGTAAAATTCCTCAAGGTCTTGGGTTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCACAACCATCTCTATGGTGAACTTCCTACAAACTTTTGTGATTCCCCTGTGATGAGCATAGTGAATCTCTCTCACAACTATCTTTCTGGTCAAATCCCTGAGTTGAGAAAATGCAGGAAACTAGTTTCATTGTCTTTATCTGACAATAGTCTCACTGGAGAAATTCCCCTTTCCCTTGCTGAGTTACCAGTGCTGACTTACCTTGATCTTTCAGACAACAATCTCACTGGTTCAATCCCAGAAGGGCTTCAAAATTTGAAGCTTGCACTTTTCAATGTGTCCTTTAATAAGCTATCTGGTAAAGTACCATACTCCTTGGTTTCTGATCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGTCCTGGATTACCCACTTCATGTTCTGATGACCCCTCAAGGAACCACCATTCTGTTGGTCTTACAACTTTGACATGTGTCTTGATCACTGCATCTTTTGTTATTGGAACTGCCATTGTTATTGGTTGGTTTATGTGGCTGTCTAGGAGGTCTTGCAAGTGTAATCAAATAGGGGTTTGGCGTTCAATGTTTTTTTATCCTCTTAGAATCACTGAGCACGATCTACTTGTAGGGATGGATGAGAAAAGCTCAAAGGGGAATGGTGGAGTTTTTGGCAAAGTTTATGTTGTAAGTTTACCTAGTGATGAACTAGTTGCTGTGAAGAAGCTAGTCAATCTGAGAAACCAGTCTTCAAGAAATTTGAAAGTTGAGATCAAGACATTAGCCAAGATAAGGCATAAGAATATTGTTAAAATTTTGGGGTTCTGCCATTCTGATGAGTCCATTTTGCTCATTTATGAACACTTGAACGAGGGAAGCTTAGGGGAGTTGATTTCATGTCAGAATTTCAAGTTGCAGTGGGGAGTTCGATTGAGGATTGCTGTTGGAGTTGCTCAAGGATTGGCATATCTTCATAAATATTATGTTCCTCACTTGCTTCACAGAAATGTTAAATCAAAGAACATTCTTTTGGATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTAGATAGAGTATTGGGAGAAGATGCATTTCAGTCAACTGTTGATTTCGAAGCAGCATCTTCTTGTTATATTGCTCCAGAATATGGCTACATTAAGAAAGCAACTGAACAATTGGATGTCTACAGTTTTGGTGTTGTATTGCTAGAGCTAGTGACAGGGAGGCAAGCAGAGAAAGCAGATTCAATGGATTCCCTTGATATTGTGAAATGGGTTAGAAGGAAAGTGAACATCACTAATGGGGTACATCCAATTCTTGACCCTAAAATATCACATACTTGTCACCAAGAAATGATTAAAGCTTTAGAAATAGCTCTTCATTGCATTTCTGTGGTGCCTGAAAAGAGGCCATCAATGGTAGAAGTTGTTAGAGCTCTTCAATCACTTGAGTCAAGGACTTGCATTGAAAATTTACAGGATTCAATTAATGAACGGTAG 2646 0.4025 MATFCIYLFLLLSMTFTILNLTSSSSEADILLSFKAFIEDPRKALSSWSNTTHYCNWTGISCSTTTSMSVTSVNLQSQNLSGVISSSICDLPNLSYLSLANNMFNHSIVSFLHLAQCSSLVNLNLSNNLIWGPIPLQISQFVSLRVLDLSRNYIEGNIPESLGSLKNLEVFNMGSNLLSGSVPSIFGSFTELVVLDLSQNPNLVIEIPEDIGQLRSLKQLLLQSSGFQGGIPDSLAGLSSLVHLDLSENNLTGGVPLALASSLRSLVSFDVSQNKLVGPFPNGICKGKGIINLSLHTNSFTGSLSNSIAECKNLERFQVQNNGFSGDFPVALWSLPKMKLVRAENNRFSGQIPESISSAVQLEQIQLDYNNFSGKIPQGLGFVKSLYRFSASHNHLYGELPTNFCDSPVMSIVNLSHNYLSGQIPELRKCRKLVSLSLSDNSLTGEIPLSLAELPVLTYLDLSDNNLTGSIPEGLQNLKLALFNVSFNKLSGKVPYSLVSDLPASFLEGNPGLCGPGLPTSCSDDPSRNHHSVGLTTLTCVLITASFVIGTAIVIGWFMWLSRRSCKCNQIGVWRSMFFYPLRITEHDLLVGMDEKSSKGNGGVFGKVYVVSLPSDELVAVKKLVNLRNQSSRNLKVEIKTLAKIRHKNIVKILGFCHSDESILLIYEHLNEGSLGELISCQNFKLQWGVRLRIAVGVAQGLAYLHKYYVPHLLHRNVKSKNILLDANFEPKLTDFALDRVLGEDAFQSTVDFEAASSCYIAPEYGYIKKATEQLDVYSFGVVLLELVTGRQAEKADSMDSLDIVKWVRRKVNITNGVHPILDPKISHTCHQEMIKALEIALHCISVVPEKRPSMVEVVRALQSLESRTCIENLQDSINER* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00625 881 Gene3D Ribonuclease Inhibitor 409 520 IPR032675 -
Rops6g00625 881 SUPERFAMILY Protein kinase-like (PK-like) 602 862 IPR011009 -
Rops6g00625 881 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 864 - -
Rops6g00625 881 SUPERFAMILY L domain-like 205 526 - -
Rops6g00625 881 Pfam Protein kinase domain 603 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00625 881 Gene3D Ribonuclease Inhibitor 287 408 IPR032675 -
Rops6g00625 881 ProSiteProfiles Protein kinase domain profile. 594 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00625 881 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Rops6g00625 881 ProSiteProfiles Leucine-rich repeat profile. 456 479 IPR001611 GO:0005515
Rops6g00625 881 Gene3D Transferase(Phosphotransferase) domain 1 670 879 - -
Rops6g00625 881 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 262 525 - -
Rops6g00625 881 SMART LRR_typ_2 189 214 IPR003591 -
Rops6g00625 881 SMART LRR_typ_2 141 164 IPR003591 -
Rops6g00625 881 SMART LRR_typ_2 165 188 IPR003591 -
Rops6g00625 881 SMART LRR_typ_2 91 113 IPR003591 -
Rops6g00625 881 SMART LRR_typ_2 454 477 IPR003591 -
Rops6g00625 881 SMART LRR_typ_2 263 287 IPR003591 -
Rops6g00625 881 SMART LRR_typ_2 238 261 IPR003591 -
Rops6g00625 881 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 670 870 - -
Rops6g00625 881 SUPERFAMILY L domain-like 25 285 - -
Rops6g00625 881 Pfam Leucine rich repeat 215 276 IPR001611 GO:0005515
Rops6g00625 881 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Rops6g00625 881 FunFam - 588 669 - -
Rops6g00625 881 Gene3D Phosphorylase Kinase; domain 1 590 669 - -
Rops6g00625 881 FunFam Leucine-rich repeat family protein 26 183 - -
Rops6g00625 881 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Rops6g00625 881 Gene3D Ribonuclease Inhibitor 183 286 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00625 Rops-Chr6 16357692 16361318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00625 31 865 Receptor kinase-like Gene Family AT5G06940 60.451 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops6g00625 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00625 - - gmx:100794428 1348.18