Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00621 ATGGGTAAGAAGAAGAGAGTTAGGGTTTCCGATGATGATGAGGAAAACGAATCTGAACTTAACCGTTCCCATCACAACGAAAATTCCCTCTACCAGGTTCTTGGTGTGGAGAGGACAGCATCTCAACAGGAAATAAAAAAGGCATACTACAAGTTGGCATTGAGGTTGCATCCTGATAAGAATCCTGGTGATGAGGAAGCTAAGGCGAAGTTTCAGCAATTGCAAAACGTTATTTCAATTCTTGGGGATGAAGAAAAACGGGCCATTTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCAGGAGATGTTGTTCAGAATCTTAAAGAGTATTTCAAAGCAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCGAACTATAGGGGATCTGATACTGAGAAAAATGATTTGATTGATCTTTACAAGAAGTACAAGGGTGATATGAACAGGATATTCTGTTCAATGCTTTGTTCGGATCCTAAACTTGACTCTCACCGATTCAAGGATATTCTTAATGAGGCTATAGCTGCTGGAGAACTGAAGGAGAAAAAAGCCTACAAGAAGTGGGCAAAGAAAATATCAGAAATCAAGCCACCAACTAGTCCTGTAAGAAGGAGGGCAAAATCAAATAAGAAATCAGAAACAGATTTGTATGCTATCATATCACATCGACGAAATGAGAGGAAAGACCGGTTTGATTCTATGTTCTCATCTCTAGTTTCAAAATATGGTGGAAGTCAAATGCCGGAACCCTCTGAAGAGGAATTTAAAGCTGCACAGAGAAAGCTGGAAAGCCGAAGGTCCTCAAAAAAGTCAAAGCGAAAGTAA 843 0.3998 MGKKKRVRVSDDDEENESELNRSHHNENSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKAKFQQLQNVISILGDEEKRAIYDQTGCVDDADLAGDVVQNLKEYFKAMYKKVTEADIEEFEANYRGSDTEKNDLIDLYKKYKGDMNRIFCSMLCSDPKLDSHRFKDILNEAIAAGELKEKKAYKKWAKKISEIKPPTSPVRRRAKSNKKSETDLYAIISHRRNERKDRFDSMFSSLVSKYGGSQMPEPSEEEFKAAQRKLESRRSSKKSKRK* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00621 280 CDD DnaJ 31 83 IPR001623 -
Rops6g00621 280 ProSiteProfiles dnaJ domain profile. 29 94 IPR001623 -
Rops6g00621 280 MobiDBLite consensus disorder prediction 202 227 - -
Rops6g00621 280 SUPERFAMILY Chaperone J-domain 26 100 IPR036869 -
Rops6g00621 280 PRINTS DnaJ domain signature 66 86 IPR001623 -
Rops6g00621 280 PRINTS DnaJ domain signature 49 64 IPR001623 -
Rops6g00621 280 PRINTS DnaJ domain signature 86 105 IPR001623 -
Rops6g00621 280 PRINTS DnaJ domain signature 31 49 IPR001623 -
Rops6g00621 280 MobiDBLite consensus disorder prediction 1 27 - -
Rops6g00621 280 SMART dnaj_3 28 86 IPR001623 -
Rops6g00621 280 MobiDBLite consensus disorder prediction 247 280 - -
Rops6g00621 280 Pfam DnaJ domain 30 91 IPR001623 -
Rops6g00621 280 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 15 280 IPR042977 -
Rops6g00621 280 Gene3D DnaJ domain 13 115 IPR036869 -
Rops6g00621 280 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00621 Rops-Chr6 16275864 16278450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00621 31 91 C2H2 Transcription Factor Family AT1G74250 40.909 6.85e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00621 K09529 - gmx:100781463 446.047