Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00620 ATGGAGAATAATAAGATGGAAGACTATGAAGTGATAGAGCAACTTGGAAGAGGAAAATTGGGTGCAACCTTTCTCCTTCTCCACAAGACTGAGAGAAAGAGGTATGTGCTGAAGAAGATTCGTGTGGCCAAGCAAACAGACAAGTCCCAACTGACAGCGCACCAAGAGATGGAACTGATAACAAGACTAAATCACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACTATATATGTACCATCACTGACTATTGCGAAGGAGGTGACATGGCTAAGAATATAAAGAAAGCTCGAGGATCTTTTTTTCCTGAGGAGAAAGTCTGCAAATGGATGACTCAATTGTTGCTAGCCGTGGACTACGTGCACTCTAATCGTGTGCTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTTAACACAGATGACCTTGCTTCCTTGGTTATTGCAACTCCAAACCACTTGTGTCCTGAGGTCCTTGCTGATATGCCTTATGGTTATAAATCTGATATATGGTCGCTTGGTTGCTGCATGTTTGAACTTGTTGCTCATCAACCGGCATTCCGTGCTCCAGACAGGGCTGGACTTATGAATAAAATAAATAGATCCACCATTTCTCCACTGCCAATTGTCTACTCTCCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCTACAGCAGCTGAATTGTTAAGGCATCCTCATTTGCAACCATTTGTTCTCCGCTGTCGTAATGCATCTTCTGTTTTTCTACCTGTACATCTTATAAGCAGTAACTCAAAGGATAAAACAAAAGGATCTCCCAAATCTAGTGGTAGCAAAGACCATAGGGACAAAGAAGCAGGATTAGTAAACCATTTGGAGCGAGTTTATCCAATTGAGGGAAATGGAGAAGCACAGACAAGAAACCGGCTTAATTATGGCAAGCTAGCAGCGTCAATCAGCACAGAAGACAACCTTGAGACTAAAATGGTTGATCCTACCAGCTACACAGTGGAATTCTCTACTAGTATTAGTGGCTCTAAAGATGGGTCAACGACATCTGAATCAACCATTTGCAGTGTGTGCAAGGGAGCAGACTTTAAAAGCAGAGTTGCAAGGGACATGGCTGACTGTGAGATCACTTCAATGAGTACACTAGAATTTTTGCATGTAGAACAATTAGTTGCTGCTGAACATTTTCAGAAGTCATATGCGATTGATATAAATGCAGTGAATAAAAAGATTGAAGATAATTTTTCCAATGAGGGTTTTGATAAAGCTGAAGCACAGAGGGAAGATACCAAACCTGAGGATTCCAGTCAATCAATAATGTCCAGTGAAGACAGCAGTGGCAATGATAAAGATGGATCCACTGATGAGGTCACATCAAAAAGTACACGAGATTCCGTGCATGTAGAACAAGGATGTTCTGCTGAACATTTTCAGAAGCCTGATGCAATTGACATAAATGCAGTAAGTACAGAAGATGGATGTAAATTTTCCAATGAAGGTTTTAATAAAGCAGAAGAAAAAAGGGCAAATGACAAACCCGAGGACTCAAGTAAATTGATAATGTCATGTGAAGACAGCAGTGGCAATGATAAAGATGGGTCCACTGATGAGGTCACATCAAAAAGTAATCCAGATTCTGTGCATGTAGAACAAGGATTTACTGCTGAACATCTTCAGAAGCCTGATGCAATTGACATAACTGCAGTAAGTACAGAAGATGAATATAAGTTTTCCAATGATGGTTTTGATAGAGCTGAAGTACAGAAGGAAGATGCCAAACCTATGGACTCAAGTAAATCAATTATTTCCAGTGAAGACAGCAATGGGAATGATAAAGATGGGTCCATTGATGAGAGCACATCAAAGAGTACACTAGATTCTGTGCATGAAGAACAAGGATTTGCCGCTGAGCAATTTCAGAAGTCAGATGCTATTGACATAAATGCAGTGACTACAAAAGTTGAAGGTATTTCTTCCAATGCAGGTTTTGATAAAGCTGAAGCACAGAGAGAAGATGCCAAACCTATGGACTCAAGTAAATCAATTATTTCCAGTGAAGGCAGCAATGGGAATGAGAGCACATCAACGAGTACACTAGATTCTGTGCATGAAGAACAAGGATTTGCCGCTGAGCAATTTCAGAAGTCAGATGCAATTGACATAAATGCAGTGACTACAAAAGTTGAAGGTATTTCTTCCAATGAAGGTTTTGATAAAGCTGAAGCACAGAGAGAAGATGCCAAACCTGAGGACTCCAGTAAATCAATTATTTCCAGTGAAGCCAGCAGTGGCAATGATAAAGATGGGTCCAAACAAAGATCATCACCAATTGTGCATCCTGTGAGTGTTGAACAAGGCCCTGAAACTGAAATCTGCTTGAAGGAAAGTGAAAACCCTCAAGCATTCACAGAAGGCTCACACATAAACATCTCAACTTCTAAGAGTAATGACACACTTGAAGGTAAGGATGAAAGCATAACAAACACACCCATAATCAGTTGTTCCAAACATGAAGAAGATGATAATGCCATTGTGGTTGATAAGACACCAAATGGCATTTCCTCAAGTACACATATTTCAGTAGGTGGTGAACAAACAAAGAGGGTGTTGGGTAATTCCTGCCAACAAAGAGCTGATGCTTTGGAAGCTCTACTTGAGTTATGTGCACAACTACTTAAGCAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGACACTGTCTCATCCAGAGAAACAGCAATTTGGCTGACAAAAAGCCTCATGTCCTCACAAAAACTTAATCCGGAAACTTAG 2883 0.4065 MENNKMEDYEVIEQLGRGKLGATFLLLHKTERKRYVLKKIRVAKQTDKSQLTAHQEMELITRLNHPYIVEYKDAWVEKEDYICTITDYCEGGDMAKNIKKARGSFFPEEKVCKWMTQLLLAVDYVHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLNTDDLASLVIATPNHLCPEVLADMPYGYKSDIWSLGCCMFELVAHQPAFRAPDRAGLMNKINRSTISPLPIVYSPTLKQLIKSMLRKNPEHRPTAAELLRHPHLQPFVLRCRNASSVFLPVHLISSNSKDKTKGSPKSSGSKDHRDKEAGLVNHLERVYPIEGNGEAQTRNRLNYGKLAASISTEDNLETKMVDPTSYTVEFSTSISGSKDGSTTSESTICSVCKGADFKSRVARDMADCEITSMSTLEFLHVEQLVAAEHFQKSYAIDINAVNKKIEDNFSNEGFDKAEAQREDTKPEDSSQSIMSSEDSSGNDKDGSTDEVTSKSTRDSVHVEQGCSAEHFQKPDAIDINAVSTEDGCKFSNEGFNKAEEKRANDKPEDSSKLIMSCEDSSGNDKDGSTDEVTSKSNPDSVHVEQGFTAEHLQKPDAIDITAVSTEDEYKFSNDGFDRAEVQKEDAKPMDSSKSIISSEDSNGNDKDGSIDESTSKSTLDSVHEEQGFAAEQFQKSDAIDINAVTTKVEGISSNAGFDKAEAQREDAKPMDSSKSIISSEGSNGNESTSTSTLDSVHEEQGFAAEQFQKSDAIDINAVTTKVEGISSNEGFDKAEAQREDAKPEDSSKSIISSEASSGNDKDGSKQRSSPIVHPVSVEQGPETEICLKESENPQAFTEGSHINISTSKSNDTLEGKDESITNTPIISCSKHEEDDNAIVVDKTPNGISSSTHISVGGEQTKRVLGNSCQQRADALEALLELCAQLLKQGKLEELAAVLRPFGEDTVSSRETAIWLTKSLMSSQKLNPET* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00620 960 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00620 960 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Rops6g00620 960 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 6 911 - -
Rops6g00620 960 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00620 960 MobiDBLite consensus disorder prediction 519 667 - -
Rops6g00620 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Rops6g00620 960 Gene3D Transferase(Phosphotransferase) domain 1 91 313 - -
Rops6g00620 960 CDD STKc_Nek 8 263 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 703 728 - -
Rops6g00620 960 FunFam serine/threonine-protein kinase Nek6 isoform X2 89 277 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 743 757 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 681 814 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 635 650 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 763 778 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 473 488 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 445 502 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 779 804 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 287 307 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 601 621 - -
Rops6g00620 960 MobiDBLite consensus disorder prediction 523 544 - -
Rops6g00620 960 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Rops6g00620 960 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00620 960 MobiDBLite consensus disorder prediction 445 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00620 Rops-Chr6 16262357 16271878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00620 9 264 MAP Kinase Kinase Kinase AT3G13530 30.739 1.41e-32 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops6g00620 Pkinase 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00620 K08857 - gmx:100818558 1126.31