Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00618 ATGGCAGACCCTTACTCTAATTTCTTCTCAGGTTTCTTCCAATTCAATCCCTCCGCACACCATTACCCTTCTTCAACCCCTTCTCACCACCACCACCATCCCTATCTCCACAACTTCATCAACCAAAGCCTCAACACTAGTGCCAACACCAGCAGCAATAGCAACAGCAACAGCTTTTTCCACCACTTTCAAACTACCACTGCTTCTTCTTCTTCTTCTTCTTATTCTTTTTCCTCACCCCCTTCTCCTCCTCTAAGAGAAGCCCTTCCACTTTTGAGCTTAATCCCAACAAAGCAAGAGGAACAACATGAAGAAGAGCAAGAACAAGAGGAGCATCATCATCATCAATCTTGCACTGCCATGGATGTGGAGGACCACCACCACCACCAACATCATAGTAATAAACCCAAAGAGGAACAAGATGAAGCTGTGACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCCTCTGTGCTTTCTTCTTCTTCTGAGATCACTGACAGAGAACAAGGAGATGGTAGTGAAGATTCTGGATTCTTACCCAACAGACTCAACAAGGGTCAGTACTGGATCCCGACCCCTTCTCAGATTCTCATTGGTCCAACACAGTTCTCTTGTCCTGTGTGCTGCAAAACCTTCAATAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCTTGTTATTGTTGTTCCCCAGGTTGCAGGAACAACATTGATCATCCAAGAGCAAAGCCCCTCAAAGATTTTAGAACCCTTCAGACACATTACAAAAGGAAGCATGGGATTAAGCCTTTCATGTGCAGAAAATGTGGCAAGGCATTTGCTGTGAGGGGGGATTGGAGAACCCATGAAAAGAATTGTGGGAAACTTTGGTATTGCATTTGTGGATCTGATTTCAAGCACAAAAGGTCACTTAAAGATCATATAAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGGATAGATGGATTTGAAGAAGAAGAAGAACCAGCATCTGAAGTAGAACAAGATAATGACTCCACCCAGTAA 1113 0.4483 MADPYSNFFSGFFQFNPSAHHYPSSTPSHHHHHPYLHNFINQSLNTSANTSSNSNSNSFFHHFQTTTASSSSSSYSFSSPPSPPLREALPLLSLIPTKQEEQHEEEQEQEEHHHHQSCTAMDVEDHHHHQHHSNKPKEEQDEAVTVALHIGLPSPSAAEMASVLSSSSEITDREQGDGSEDSGFLPNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDNDSTQ* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00618 370 Gene3D Classic Zinc Finger 271 347 - -
Rops6g00618 370 FunFam Zinc finger protein WIP2 262 344 - -
Rops6g00618 370 PANTHER ZINC FINGER PROTEIN WIP2 46 366 IPR043584 GO:0003700|GO:0010468
Rops6g00618 370 MobiDBLite consensus disorder prediction 157 186 - -
Rops6g00618 370 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Rops6g00618 370 Gene3D Classic Zinc Finger 208 231 - -
Rops6g00618 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 313 IPR013087 -
Rops6g00618 370 SMART c2h2final6 293 313 IPR013087 -
Rops6g00618 370 SMART c2h2final6 209 231 IPR013087 -
Rops6g00618 370 SUPERFAMILY beta-beta-alpha zinc fingers 275 313 IPR036236 -
Rops6g00618 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00618 Rops-Chr6 16124768 16127128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00618 1 367 C2H2 Transcription Factor Family AT3G57670 60.945 9.09e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g00618 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00618 - - gmx:100783088 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00618 6 16124768 16127128 Rops6g00618 6 16124768 16127128 ECH
Rops6g00618 6 16124768 16127128 Rops7g00830 7 11090278 11092401 ECH
Rops8g02848 8 64137393 64139773 Rops6g00618 6 16124768 16127128 PCT