Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00610 ATGGAAGCTTGCAAAAAGTCCCCATTAAAGCCTTGGAAGAAAGGACCAACCAGGGGTAAAGGTGGTCCCCAGAATGCTTCATGTGAATATAGAGGTGTTAGACAAAGAACATGGGGCAAATGGGTTGCTGAGATAAGAGAACCAAAGAAGAGAACAAGACTCTGGCTTGGCTCTTTTGCCACAGCTGAAGAAGCTGCTTTGGCTTATGATGAGGCTGCAAGAAGACTCTATGGACCAGATGCTTACCTTAACCTTCCCCACAAGCAACCAACCTTAAGTTCCACCAAATTTCAAAAGTTCAAATGGTTTCCTTCCAAGAACTTCATTTCCATGTTTCCTTCACGTGGATTACTCAATCTAAATGCTCAACCGAGTGTTCATGTAATCCATCAGAGGCTGCAACAGCTTAAGCAAAATGGGGTTGTAAGTCAATCCCATTCTAGTTCATCCAATGATTCAAAGGTAGAACTTGAGAATATTGGCAGCAAAAACCATGCAGAAATTCCTCCACAAGAAGAAGATGCTCAGAATTCCTCAGAAAACTTGCTTGGAGATCTTCAAGAGAAACCCCAGATAGACCTGCATGAGTTTCTTCAACAAATGGGAATACTTAAAAGAGAAGAAAGAGAGTCTGAAAAAACTGGTAGCTCTGGAAGTTCAGCCGTATCTGGAGCTGCATCAAGAGATGACAATGATCAACAAGGAGTGTTTTCTGACATGGGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAGTTTCAGATAATCATGAATCAGAAGCCATCCAGTTTGAAGCATACAACGTATACGAGGACCTTACTTTCTCCACTTCCATTTGGAACTACTAA 849 0.4205 MEACKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAALAYDEAARRLYGPDAYLNLPHKQPTLSSTKFQKFKWFPSKNFISMFPSRGLLNLNAQPSVHVIHQRLQQLKQNGVVSQSHSSSSNDSKVELENIGSKNHAEIPPQEEDAQNSSENLLGDLQEKPQIDLHEFLQQMGILKREERESEKTGSSGSSAVSGAASRDDNDQQGVFSDMGVNWEALIEMHGVSDNHESEAIQFEAYNVYEDLTFSTSIWNY* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00610 282 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Rops6g00610 282 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Rops6g00610 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 245 - -
Rops6g00610 282 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Rops6g00610 282 MobiDBLite consensus disorder prediction 206 236 - -
Rops6g00610 282 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Rops6g00610 282 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Rops6g00610 282 MobiDBLite consensus disorder prediction 215 236 - -
Rops6g00610 282 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g00610 282 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Rops6g00610 282 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Rops6g00610 282 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Rops6g00610 282 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00610 Rops-Chr6 15827855 15828703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00610 5 282 AP2-EREBP Transcription Factor Family AT3G57600 52.113 5.31e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops6g00610 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00610 - - gmx:100801311 391.349