Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00608 ATGGGTGATGATGATGCCTCAGCACTTCCATGGCTTTGGGTCATTGAAGCCCTAGCTGGCTTCAGCAAAGTCACCGCTTCCACATTACAGGGTTTGATTGATGCGGCTCCTGTCGGAGCAGATGATTTTTGTGAAAATACAAGGGAATTGATTGCTATGAAGTGTTTGGAGGAACTGTCCACAGCTTCTCCTAATGGGGTCGATCTTGATGCTTCTTCTACATTGGATTGCAGAGCCGGATTTGATTTTTCGCGTAGTTGTGAAGATGTGCTCCAAGAAATATTGCATGAGATACCATTATCAAATCTGAAAATGGCTGGAGCAGAGCTTTTGAAACGGGATGTTTACCCGTTTATTATGCACAAAAGAGCTGGCACGGTTAAATGTCACTTAGAGCAGCTGCAAGAATCGATCTTGGGGGGTACTCTGCCACTTTCCGATAGCTTAAAAGAAAGGAGTGGATTATTCCAAAGGAATAGGGGATGTACAGTACATGTGAATGATGGCGAATGTAATGATCATTTAGAAAAGGATGATGGGAACACTGCTTATGCTGAAAATATGGGAGCTAAAGAGAACTCCATGTCCTTAATTTTAGAGAATGGCAACAAATCTTCAAAAGAACAGGCACTTGACAATAAGTTTTTACCCTCTAAGAGGAATATGGTTTACTCAGCTGATGAGCATTTTATGGGTTACCTTCATGAAAAGCAAGTTTGTATAAATGAATGTGACAATTTCTTAAGAAGCACGAAGAGGCTTAAATGTTATGGATCTACAAGTTTTGTGTCCAAGCAAGAAAAGCCAGATTCTCGACTTGGAAAGGAAGTGTCAGAAAATTCAACTGAAAAAATTATTCTAATTTCTGAGGAAGGAGGGCATTACACAGAAAAGAATAACAGGGAAACTCTGAGTGATGGGTCCTTCAAGGATAGTCACAATAGGTGCTGTGCTTCAAATTTGTGCCAATCCAGCAGTCATAATGAATCAAATATTCCTTTTAATGCTACCTTGATGCCTCCGCATACATTTGGAGGTGAAAATTCTCAGCAACAGCAGGTTGAGTCAATTCCAACAAATGTTGGACTCCCAGATGGAATTCAGAATAAGATTCCTGGAAGTAAACCCTGCTCTAAATGTGAAACAAATTTGCAAATCGAAGATCCAAATGGCTCTCAGCAGACAGTTTCTAGTAGTGATAAAGCTCAAGATGATACTAGTAATGGTTGTGGAGTGGATATATCGGGTGATAAAATTGTGTATCAAGGTGAAAAGATTAATCTTGTAGTCAAAAAGCATGAAGAACAAAATCTTGATATGAGCTGCAATGAAGATGGTCAATTGTTGGTTTGTGATGTGACTACTGTCCCAATAGTGGTTCCTGAAAGTTGTCTTGGTATGACAACTACCATTGATCCTCAGCATACATCTGGAGCTGAACCTTGCCAAAATACATCTATGGATGAAACCAATGATACTGTACATGTTGAGCCCATTCCAACAAATGATGATAATGCCCCAGATAAAATTCAGCATACGATTGGTGAATCCCAACCCAAACAGAAGGAACCAAATGTTGCATCTTTAAATGTCTCTCAGAAGCCAATTGCTAGTGATAAAATTGTAGTTGATACTACTGCTAATGGTTGTGGAGCAGAGTTATCAAGTGATAGTGATGGGTATCATAATGAAAAGATTGATCTTGCAGCCAGAAAGCATGAACTCCTGAGCTCCCAATGCACATTTGGTCAAGATTTGTCACTAATGACTGAGTCAACTGAACAAAATCTCTGCATGAAGTGTAATGAAGATGGCCAATTACTGGTTTGTAAAACAACTACTTGCTGGTTGATGGTGCATAAAAACTGTCTCGGTGCATCTACTCAGTTGGATGCAGAGGGCAACTTTATCTGCCCATTTTGTATGTATTCTCACTCTATTTCAAAATATCTGGAAGCTAAGAAAAAAGCTTCCTTGGCAAGGAAAGAATTAGCTATCTTCATAAGTAAGGGTATAGGGAATCAAGCCAAGGAACATGTTCATGAATTTCATAGACAAGCACCTACTTTTTCAAGAAAGAGTGGTAGCTGTGAACATATTCATGTCAAAAACGACAGAAATGATCTGTTAACAGGGTATGAAGAAAATAGAGAAGATCATGTTGGCGAGCATGCAAATGATGTTGATAATCTTCAGTTGGAAAGAAGTCAGCAACAACCGCCTACATCACGTGTCCACTCATCATGCAGAGAAAAGGAAAATGTAGATAATGGATTAACAGATGATGTAAGAAGAGAAGAGGAAGGGGTTGAAATGCTGAATGCAAATAGCTTAACTGGTGGAACAGTTGAAGGAAAAGAAGTGCCAACTGACCATGTAGATGGACATGGTGGTGATAAATTTTCTGGTAAAAATTCCATTATTGTCTCTGGAAATGAAAGCAATGCTGGGGAAAAAGTTCCTGAAAATATGACAAAACAACACAATATGGATGGAACAGTAGAGCCAATTTGTGCACAAGATACTGGAAAAGAGGAAATTTCTGAAGATGAATGCAAAAAGCATGTTATTTCTAGATACTCCATGAGACTCCATAAGCGTGAAATACTGTACAAACCCCAAGCAAGCCCTCAGTCAAGACGAAAGAAAATTCCATGGACAGCTGAGGAGGAAGAGCTTATAAGGGAGGGAGTGCAGAAGTTTGGTTTCACATGGAAGAAAATTTTGGCATTTGGTTCTCACGTGTTTGAAAAGGATGATAGGCGTCGTACGGCACAAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTCACGCAAAATTGGATAAAAAGGCTTCATCTTAA 2847 0.3945 MGDDDASALPWLWVIEALAGFSKVTASTLQGLIDAAPVGADDFCENTRELIAMKCLEELSTASPNGVDLDASSTLDCRAGFDFSRSCEDVLQEILHEIPLSNLKMAGAELLKRDVYPFIMHKRAGTVKCHLEQLQESILGGTLPLSDSLKERSGLFQRNRGCTVHVNDGECNDHLEKDDGNTAYAENMGAKENSMSLILENGNKSSKEQALDNKFLPSKRNMVYSADEHFMGYLHEKQVCINECDNFLRSTKRLKCYGSTSFVSKQEKPDSRLGKEVSENSTEKIILISEEGGHYTEKNNRETLSDGSFKDSHNRCCASNLCQSSSHNESNIPFNATLMPPHTFGGENSQQQQVESIPTNVGLPDGIQNKIPGSKPCSKCETNLQIEDPNGSQQTVSSSDKAQDDTSNGCGVDISGDKIVYQGEKINLVVKKHEEQNLDMSCNEDGQLLVCDVTTVPIVVPESCLGMTTTIDPQHTSGAEPCQNTSMDETNDTVHVEPIPTNDDNAPDKIQHTIGESQPKQKEPNVASLNVSQKPIASDKIVVDTTANGCGAELSSDSDGYHNEKIDLAARKHELLSSQCTFGQDLSLMTESTEQNLCMKCNEDGQLLVCKTTTCWLMVHKNCLGASTQLDAEGNFICPFCMYSHSISKYLEAKKKASLARKELAIFISKGIGNQAKEHVHEFHRQAPTFSRKSGSCEHIHVKNDRNDLLTGYEENREDHVGEHANDVDNLQLERSQQQPPTSRVHSSCREKENVDNGLTDDVRREEEGVEMLNANSLTGGTVEGKEVPTDHVDGHGGDKFSGKNSIIVSGNESNAGEKVPENMTKQHNMDGTVEPICAQDTGKEEISEDECKKHVISRYSMRLHKREILYKPQASPQSRRKKIPWTAEEEELIREGVQKFGFTWKKILAFGSHVFEKDDRRRTAQDLKDKWKNMCKAHAKLDKKASS* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00608 948 MobiDBLite consensus disorder prediction 385 410 - -
Rops6g00608 948 ProSitePatterns Zinc finger PHD-type signature. 598 641 IPR019786 -
Rops6g00608 948 ProSiteProfiles Zinc finger PHD-type profile. 595 644 IPR019787 -
Rops6g00608 948 SUPERFAMILY Homeodomain-like 885 942 IPR009057 -
Rops6g00608 948 SUPERFAMILY FYVE/PHD zinc finger 591 647 IPR011011 -
Rops6g00608 948 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 486 938 - -
Rops6g00608 948 SMART sant 882 938 IPR001005 -
Rops6g00608 948 MobiDBLite consensus disorder prediction 475 498 - -
Rops6g00608 948 MobiDBLite consensus disorder prediction 385 414 - -
Rops6g00608 948 CDD SANT_TRF 884 937 - -
Rops6g00608 948 Pfam Myb-like DNA-binding domain 886 939 - -
Rops6g00608 948 MobiDBLite consensus disorder prediction 731 745 - -
Rops6g00608 948 MobiDBLite consensus disorder prediction 728 757 - -
Rops6g00608 948 MobiDBLite consensus disorder prediction 475 527 - -
Rops6g00608 948 ProSiteProfiles Myb-like domain profile. 878 936 IPR001005 -
Rops6g00608 948 SMART PHD_3 597 642 IPR001965 -
Rops6g00608 948 MobiDBLite consensus disorder prediction 506 527 - -
Rops6g00608 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 679 IPR013083 -
Rops6g00608 948 Gene3D - 875 939 - -
Rops6g00608 948 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 878 940 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00608 Rops-Chr6 15817249 15827211 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops6g00608 Myb_DNA-bind_6 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00608 - - cam:101508857 1151.35