Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00606 ATGATGAACCACTTGACTGTAGAGACTGAAGATTCTTTTGCGAGCTTGCTCGAGCTGGCAGCCAATAATGATGTTGAAGGTTTCAAACGAATGATTGAGCGGGATCCTTCCTGTGTTGATGAGGAAGGGCTTTGGTATAGTCGTAGGAAGGGCTCAAAGCAGATGGTCAATGAGCGCAGAACACCTTTGATGGTAGCTGCTACTTATGGAAGCATTGATGTTATGAAACTGATTCTTTCACTATCTGATTATGATATTAATAAACCCTGTGGCCTTGACAAGAGCACTCCCCTTCATTGTGCGGCCTCAGGTGGAGCTGTAAATGCTGTTGATGTTATTAAACTTCTTCTAGAAGCGGGGGCTGATCCAAATTTTGTGGATGGCAATGGTCATCGACCAGTTGATGTTATTGTTGTTCCCCCAAAGCTTGAATTTGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGACTCCATTACAGGGTGTAATCTTAGGGTGATTACAGCCCCATCAAACAGATATTCTCCACCTTTATCAGCTTCACCAGAGAACGGCTCTCCTTCTGCAGTTGATTTCCAATTGAAGTCAAAGTTAAACGATGTCAATATTTCTTCTGCATCAGAGAAGAAGGAATATCCTGTTGATCCATCCCTTCCAGACATCAAGAATAGCATATATTCAACAGATGAATTTCGAATGTATTCTTTCAAGGTTCGGCCTTGTTCACGTGCTTATTCTCATGATTGGACTGAGTGCCCTTTTGTTCATCCTGGGGAGAATGCTCGAAGAAGGGACCCTAGAAAGTACCATTACAGTTGTGTCCCTTGTCCTGAATTTCGAAAGGGTGCTTGCCGACGTGGTGATATGTGTGAATATGCGCATGGAGTTTTTGAGTGCTGGTTGCATCCTGCACAATATCGTACTCGTCTTTGCAAGGATGGGACTAGTTGCTCTAGAAGAGTTTGCTTTTTTGCCCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCCACTGGTTCTGCTGTTCCATCTCCTCGCTCAAGCACATCTTCTGCAATGGATTTTGCTGCAGCTATGAGCCTGTTGCCCGGCTCTCCTTCTTCAATGTCTGTCATGTCTCCTTCACCATTCACTCCACCTATGTCACCCTCTGCCAATGGCATGTCTCACTCTTCTGTTGCTTGGCCCCAACCAAATGTCCCGGCCTTGCATCTACCAGGGAGTAATCTTCATTCCAGTAGATTGAGATCTTCTTTCCATGCTAGAGATATTCCTGCAGATGACTTTGACTTGTTGCCAGACTATGATGTTCATCAACAACAGCTCCTCAACGAGTTATCTTGCCTCTCTCAACAGCCTATGAATTCTAATACTATCAATCGTTCTGGTCGGATGAAAAATCTGACCCCATCAAATATCGATGATCTCTTTGCTGCTGAGAGTTCTTCACCTAGGTTTGCTGATCCGGCATTGGCTTCAGCTGTTTTTTCTCCAACACACAAATCGGCTGTCCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTATCACCTGTGAATACAAACTTTTCTGCTAAAAATGTTGACCACCCTTTATTGCAGGCCTCTTTTGGGGTTCAAACATCAGGAAGGATGTCTCCTCGAAATGTGGAACCTATTTCTCCAATGAGCTCAAGGATTTCTATGCTAGCTCAGCATGAGAAGCAACAACAATTTCGTAGCCTTAGCTTCCGGGAACATGGCTCCAGGTCTGCTAATGTTGCTGCTGGGTCCCCAGTCAATTCTTGGTCAAAATGGGGATCCTCCAATGGTGCATTGGATTGGGCTGTGAGTGCAGATGAATTAGGTAAGCTACGCAGATCATCTTCATTTGAGCTTGGAAATAATGGTGAGGAGCCTGATTTGTCATGGGTCCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAGGAGAAGCTAGCAACAACTGGCTCGAATATGGCAGCAGCTGGATCCTCCGGTGAGGGATCAAATGTGAGTGCGCCGATGGACTCGGTTGATCATGCTGTATTAGGAGCATGGCTTGATCAAATGCAGCTTGATCATCTTGTGGCTCTGCAGAATTAA 2106 0.4463 MMNHLTVETEDSFASLLELAANNDVEGFKRMIERDPSCVDEEGLWYSRRKGSKQMVNERRTPLMVAATYGSIDVMKLILSLSDYDINKPCGLDKSTPLHCAASGGAVNAVDVIKLLLEAGADPNFVDGNGHRPVDVIVVPPKLEFVKNSLEELLQTDDSITGCNLRVITAPSNRYSPPLSASPENGSPSAVDFQLKSKLNDVNISSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSLLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNLHSSRLRSSFHARDIPADDFDLLPDYDVHQQQLLNELSCLSQQPMNSNTINRSGRMKNLTPSNIDDLFAAESSSPRFADPALASAVFSPTHKSAVLNQFQQQQSLLSPVNTNFSAKNVDHPLLQASFGVQTSGRMSPRNVEPISPMSSRISMLAQHEKQQQFRSLSFREHGSRSANVAAGSPVNSWSKWGSSNGALDWAVSADELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATTGSNMAAAGSSGEGSNVSAPMDSVDHAVLGAWLDQMQLDHLVALQN* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00606 701 Gene3D - 273 334 - -
Rops6g00606 701 Gene3D - 1 235 IPR036770 -
Rops6g00606 701 PRINTS Ankyrin repeat signature 59 74 IPR002110 GO:0005515
Rops6g00606 701 PRINTS Ankyrin repeat signature 112 126 IPR002110 GO:0005515
Rops6g00606 701 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Rops6g00606 701 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Rops6g00606 701 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Rops6g00606 701 Pfam CCCH-type zinc finger 276 296 IPR041367 -
Rops6g00606 701 SMART ANK_2a 93 125 IPR002110 GO:0005515
Rops6g00606 701 SMART ANK_2a 11 40 IPR002110 GO:0005515
Rops6g00606 701 SMART ANK_2a 58 88 IPR002110 GO:0005515
Rops6g00606 701 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Rops6g00606 701 SUPERFAMILY Ankyrin repeat 16 139 IPR036770 -
Rops6g00606 701 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Rops6g00606 701 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Rops6g00606 701 PANTHER UNKEMPT FAMILY MEMBER 18 645 IPR045234 -
Rops6g00606 701 Pfam Ankyrin repeats (3 copies) 25 125 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00606 Rops-Chr6 15773673 15777637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00606 7 694 C2H2 Transcription Factor Family AT5G12850 52.266 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops6g00606 Ank_2 5e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00606 - - gmx:100813554 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00606 6 15773673 15777637 Rops6g00606 6 15773673 15777637 ECH