Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00598 ATGGAGAAGATGGCACTCACTAATATCCACCATGGCTCCTTCTTCTTCTCCAATACAACCTCTTCTTCAGTCTTCTCTTCTAACAAACTACTTGGCCTTCCCTTATCTTCTTCTTCTTCTTATTATTCAACTGCCGCCAAACCACGCCTTCAACTTGCTTCCAGGAACAACAACAACAACAACAACACGACCTTCGGACCCATCAAATGTTCTGTTTCTGAAGCCACAGAGCCCAAAGCTGAGAAGAAAAGGCAATTGATGAGAAGAGGAGACGTAAGAAACATTGCTATTGTTGCTCACGTTGACCATGGAAAAACAACTCTCGTTGATGCCATGCTCAAACAAACGAAGGTATTTCGTGATAATCAATTTGTACAGGAGAGGATAATGGACTCGAATGATTTGGAGCGTGAAAGAGGAATCACAATACTGAGTAAAAATACATCTGTCACCTATAAAGACACAAAGATTAATATAATAGATACTCCCGGTCACTCTGATTTTGGAGGTGAAGTGGAGCGCATCTTAAACATGGTGGAAGGAATCCTTCTAGTGGTGGATTCTGTCGAAGGGCCAATGCCACAGACAAGATTTGTCCTAAAGAAGGCTTTAGAGTTTGGCCATTCAGTTGTTGTGGTTGTGAATAAAATAGACAGGCCTTCTGCTCGCCCAGATTTTGTAGTCAATTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGACGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGCAAGCAGGGTTGTCTCCTGAAAATCTGGCAGCAGACCTTGGGCCATTGTTTGAATCCATCATCAGATGCATCCCTGGACCACGTATTGACAAAGATGGCGCACTTCAAATGCTTGTTACAAATATTGAGTATGATGAACATAAAGGACGTATAGCAATTGGGCGCTTGCAAGCTGGGGTTTTAGAAAAAGGCATGGATGTCAGGGTATGTACTTCAGAAGATTCATGTAGATTTGGAAGAGTTAGTGAGCTTTATGTGTATGACAAATTCAATAGGGTCCCTGCAGAAAGTGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTACTGATATTCAGATTGGGGAGACAATTGCTGATAAAGTATCTGGGAAGCCACTGCCTTCCATCAAGGTGGAAGAACCAACAGTTAAAATGTCTTTTTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTGGCTATGAAAGTTGAAGACGGTGAAACAGCAGATACATTTGTTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTTAATGAACAATTGTTGGAACCGTATGAGATTGCAACTGTGGAGGTACCAGAAGAACACATGGGAGCTGTTGTTGAACTTCTTGGGAAGAGACGAGGGCAAATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGTCTTCTTGGATTGAGGAATGCAATTTTAACTGCTTCCCGTGGGACAGCTATCCTCAACACTATCTTTGATAGCTATGGGCGTTGGGCTGGTGACATTAGTACTCGGGATCAAGGATCACTGGTTGCGTTTGAGGATGGGTCAAGTACTTCTTATGCAATCTCTAGCTCACAGGAGAGGGGACAGATGTTTATTGGTCCTGGAGTGGAAGTTTACAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGGCTTTGAATGTTTGCAAGAAAAAAGCTGCAACAAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGACACTCCGTTGGATTATAGTCTTGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAAGTCACCCCCCAAAGTATCCGAATGTCCAAGAATCCAAAACTTGCAAAGAAAGGAAGGTAG 2055 0.4224 MEKMALTNIHHGSFFFSNTTSSSVFSSNKLLGLPLSSSSSYYSTAAKPRLQLASRNNNNNNNTTFGPIKCSVSEATEPKAEKKRQLMRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAADLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRLQAGVLEKGMDVRVCTSEDSCRFGRVSELYVYDKFNRVPAESVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNEQLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGRWAGDISTRDQGSLVAFEDGSSTSYAISSSQERGQMFIGPGVEVYKGQIVGIHQRPGDLALNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMSKNPKLAKKGR* 685
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00598 684 Gene3D bipa protein 570 649 IPR042116 -
Rops6g00598 684 Gene3D - 90 285 IPR027417 -
Rops6g00598 684 CDD BipA_TypA_C 485 564 IPR035651 -
Rops6g00598 684 FunFam GTP-binding protein TypA 286 386 - -
Rops6g00598 684 NCBIfam translational GTPase TypA/BipA 92 679 IPR006298 GO:0003924|GO:0005525
Rops6g00598 684 SUPERFAMILY Translation proteins 238 385 IPR009000 -
Rops6g00598 684 SMART EFG_C_a 482 571 IPR000640 -
Rops6g00598 684 FunFam GTP-binding protein TypA 393 499 - -
Rops6g00598 684 Gene3D - 476 569 - -
Rops6g00598 684 PRINTS GTP-binding elongation factor signature 138 146 IPR000795 GO:0003924|GO:0005525
Rops6g00598 684 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
Rops6g00598 684 PRINTS GTP-binding elongation factor signature 210 219 IPR000795 GO:0003924|GO:0005525
Rops6g00598 684 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Rops6g00598 684 Gene3D Translation factors 286 386 - -
Rops6g00598 684 FunFam GTP-binding protein TypA 89 285 - -
Rops6g00598 684 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 85 260 - -
Rops6g00598 684 FunFam GTP-binding protein TypA 476 569 - -
Rops6g00598 684 CDD TypA_BipA 91 284 IPR047041 -
Rops6g00598 684 SUPERFAMILY EF-G C-terminal domain-like 390 474 IPR035647 -
Rops6g00598 684 CDD BipA_III 392 470 IPR047043 -
Rops6g00598 684 Pfam Elongation factor Tu GTP binding domain 92 282 IPR000795 GO:0003924|GO:0005525
Rops6g00598 684 CDD BipA_TypA_II 292 385 IPR047042 -
Rops6g00598 684 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 285 IPR000795 GO:0003924|GO:0005525
Rops6g00598 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 292 IPR027417 -
Rops6g00598 684 Gene3D Elongation Factor G (Translational Gtpase), domain 3 393 676 - -
Rops6g00598 684 SUPERFAMILY EF-G C-terminal domain-like 485 600 IPR035647 -
Rops6g00598 684 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
Rops6g00598 684 FunFam GTP-binding protein TypA 570 656 - -
Rops6g00598 684 NCBIfam small GTP-binding protein domain 93 241 IPR005225 GO:0005525
Rops6g00598 684 Pfam Elongation factor G C-terminus 482 568 IPR000640 -
Rops6g00598 684 Pfam Elongation factor Tu domain 2 306 375 IPR004161 GO:0005525
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops6g00598 Rops-Chr6 15562679 15570461 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00598 92 219 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 4.27e-24 106
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00598 K06207 - gmx:100785222 1176.39
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00598 6 15562679 15570461 Rops6g00598 6 15562679 15570461 ECH