Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops6g00598 | ATGGAGAAGATGGCACTCACTAATATCCACCATGGCTCCTTCTTCTTCTCCAATACAACCTCTTCTTCAGTCTTCTCTTCTAACAAACTACTTGGCCTTCCCTTATCTTCTTCTTCTTCTTATTATTCAACTGCCGCCAAACCACGCCTTCAACTTGCTTCCAGGAACAACAACAACAACAACAACACGACCTTCGGACCCATCAAATGTTCTGTTTCTGAAGCCACAGAGCCCAAAGCTGAGAAGAAAAGGCAATTGATGAGAAGAGGAGACGTAAGAAACATTGCTATTGTTGCTCACGTTGACCATGGAAAAACAACTCTCGTTGATGCCATGCTCAAACAAACGAAGGTATTTCGTGATAATCAATTTGTACAGGAGAGGATAATGGACTCGAATGATTTGGAGCGTGAAAGAGGAATCACAATACTGAGTAAAAATACATCTGTCACCTATAAAGACACAAAGATTAATATAATAGATACTCCCGGTCACTCTGATTTTGGAGGTGAAGTGGAGCGCATCTTAAACATGGTGGAAGGAATCCTTCTAGTGGTGGATTCTGTCGAAGGGCCAATGCCACAGACAAGATTTGTCCTAAAGAAGGCTTTAGAGTTTGGCCATTCAGTTGTTGTGGTTGTGAATAAAATAGACAGGCCTTCTGCTCGCCCAGATTTTGTAGTCAATTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGACGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGCAAGCAGGGTTGTCTCCTGAAAATCTGGCAGCAGACCTTGGGCCATTGTTTGAATCCATCATCAGATGCATCCCTGGACCACGTATTGACAAAGATGGCGCACTTCAAATGCTTGTTACAAATATTGAGTATGATGAACATAAAGGACGTATAGCAATTGGGCGCTTGCAAGCTGGGGTTTTAGAAAAAGGCATGGATGTCAGGGTATGTACTTCAGAAGATTCATGTAGATTTGGAAGAGTTAGTGAGCTTTATGTGTATGACAAATTCAATAGGGTCCCTGCAGAAAGTGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTACTGATATTCAGATTGGGGAGACAATTGCTGATAAAGTATCTGGGAAGCCACTGCCTTCCATCAAGGTGGAAGAACCAACAGTTAAAATGTCTTTTTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTGGCTATGAAAGTTGAAGACGGTGAAACAGCAGATACATTTGTTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTTAATGAACAATTGTTGGAACCGTATGAGATTGCAACTGTGGAGGTACCAGAAGAACACATGGGAGCTGTTGTTGAACTTCTTGGGAAGAGACGAGGGCAAATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGTCTTCTTGGATTGAGGAATGCAATTTTAACTGCTTCCCGTGGGACAGCTATCCTCAACACTATCTTTGATAGCTATGGGCGTTGGGCTGGTGACATTAGTACTCGGGATCAAGGATCACTGGTTGCGTTTGAGGATGGGTCAAGTACTTCTTATGCAATCTCTAGCTCACAGGAGAGGGGACAGATGTTTATTGGTCCTGGAGTGGAAGTTTACAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGGCTTTGAATGTTTGCAAGAAAAAAGCTGCAACAAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGACACTCCGTTGGATTATAGTCTTGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAAGTCACCCCCCAAAGTATCCGAATGTCCAAGAATCCAAAACTTGCAAAGAAAGGAAGGTAG | 2055 | 0.4224 | MEKMALTNIHHGSFFFSNTTSSSVFSSNKLLGLPLSSSSSYYSTAAKPRLQLASRNNNNNNNTTFGPIKCSVSEATEPKAEKKRQLMRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAADLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRLQAGVLEKGMDVRVCTSEDSCRFGRVSELYVYDKFNRVPAESVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNEQLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGRWAGDISTRDQGSLVAFEDGSSTSYAISSSQERGQMFIGPGVEVYKGQIVGIHQRPGDLALNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMSKNPKLAKKGR* | 685 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops6g00598 | 684 | Gene3D | bipa protein | 570 | 649 | IPR042116 | - | |
Rops6g00598 | 684 | Gene3D | - | 90 | 285 | IPR027417 | - | |
Rops6g00598 | 684 | CDD | BipA_TypA_C | 485 | 564 | IPR035651 | - | |
Rops6g00598 | 684 | FunFam | GTP-binding protein TypA | 286 | 386 | - | - | |
Rops6g00598 | 684 | NCBIfam | translational GTPase TypA/BipA | 92 | 679 | IPR006298 | GO:0003924|GO:0005525 | |
Rops6g00598 | 684 | SUPERFAMILY | Translation proteins | 238 | 385 | IPR009000 | - | |
Rops6g00598 | 684 | SMART | EFG_C_a | 482 | 571 | IPR000640 | - | |
Rops6g00598 | 684 | FunFam | GTP-binding protein TypA | 393 | 499 | - | - | |
Rops6g00598 | 684 | Gene3D | - | 476 | 569 | - | - | |
Rops6g00598 | 684 | PRINTS | GTP-binding elongation factor signature | 138 | 146 | IPR000795 | GO:0003924|GO:0005525 | |
Rops6g00598 | 684 | PRINTS | GTP-binding elongation factor signature | 158 | 168 | IPR000795 | GO:0003924|GO:0005525 | |
Rops6g00598 | 684 | PRINTS | GTP-binding elongation factor signature | 210 | 219 | IPR000795 | GO:0003924|GO:0005525 | |
Rops6g00598 | 684 | PRINTS | GTP-binding elongation factor signature | 94 | 107 | IPR000795 | GO:0003924|GO:0005525 | |
Rops6g00598 | 684 | Gene3D | Translation factors | 286 | 386 | - | - | |
Rops6g00598 | 684 | FunFam | GTP-binding protein TypA | 89 | 285 | - | - | |
Rops6g00598 | 684 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 85 | 260 | - | - | |
Rops6g00598 | 684 | FunFam | GTP-binding protein TypA | 476 | 569 | - | - | |
Rops6g00598 | 684 | CDD | TypA_BipA | 91 | 284 | IPR047041 | - | |
Rops6g00598 | 684 | SUPERFAMILY | EF-G C-terminal domain-like | 390 | 474 | IPR035647 | - | |
Rops6g00598 | 684 | CDD | BipA_III | 392 | 470 | IPR047043 | - | |
Rops6g00598 | 684 | Pfam | Elongation factor Tu GTP binding domain | 92 | 282 | IPR000795 | GO:0003924|GO:0005525 | |
Rops6g00598 | 684 | CDD | BipA_TypA_II | 292 | 385 | IPR047042 | - | |
Rops6g00598 | 684 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 90 | 285 | IPR000795 | GO:0003924|GO:0005525 | |
Rops6g00598 | 684 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 80 | 292 | IPR027417 | - | |
Rops6g00598 | 684 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 393 | 676 | - | - | |
Rops6g00598 | 684 | SUPERFAMILY | EF-G C-terminal domain-like | 485 | 600 | IPR035647 | - | |
Rops6g00598 | 684 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 131 | 146 | IPR031157 | - | |
Rops6g00598 | 684 | FunFam | GTP-binding protein TypA | 570 | 656 | - | - | |
Rops6g00598 | 684 | NCBIfam | small GTP-binding protein domain | 93 | 241 | IPR005225 | GO:0005525 | |
Rops6g00598 | 684 | Pfam | Elongation factor G C-terminus | 482 | 568 | IPR000640 | - | |
Rops6g00598 | 684 | Pfam | Elongation factor Tu domain 2 | 306 | 375 | IPR004161 | GO:0005525 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops6g00598 | Rops-Chr6 | 15562679 | 15570461 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops6g00598 | 92 | 219 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 44.615 | 4.27e-24 | 106 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops6g00598 | K06207 | - | gmx:100785222 | 1176.39 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops6g00598 | 6 | 15562679 | 15570461 | Rops6g00598 | 6 | 15562679 | 15570461 | ECH |