Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00596 ATGGGCAATTGCTGTGCAACACCGTCGGCTATAACCAAGAGGGGAAAAAGGAAGGAAAAGAAGAAAGCCCGTGACGATGGGCGGCCTACGAAAAAGATCGTGGTCCTGAAGGAACCCACGGGCCGGGAGATCGGGCTTCGATACGAGCTGGGCCGGGAGTTAGGGAGAGGGGAATTCGGAGTAACGTATTTTTGCAAAGACAAGGAAAGTGGGGAGGATATGGCGTGTAAATCGATTTCGAAGGAGAAACTTAGAACCCCTATTGATGTAGAAGATGTGAGGAGGGAAGTGGAGATTATGAGGCACTTGCCGAAACACCCAAACATTGTGTCGTTGAAGGATACGTTTGAAGACGACGATGCCGTTCATCTCGTTATGGAGTTGTGTGAAGGTGGTGAACTTTTTGATCGGATTGTCGCACGTGGCCATTATACTGAACGTGCTGCTGCTGGTGTTACAAAAACCATCGTTGAAATTGTTCAGATGTGCCACAAACATGGGGTGATCCATCGGGATCTCAAACCTGAGAACTTTTTGTTTGCAAGCAAGAAGGAAACAGCACCTTTGAAAGCTATTGACTTTGGTTTGTCAGTTTTCTTTAAACCAGGTGAAAAATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGAGAAATTATGGCCCTGAAATAGATATCTGGAGTGCTGGAGTAATTCTTTACATCTTACTCTGTGGTGTCCCACCATTTTGGGCAGAAACCGAACAGGGAGTTGCTCAAGCAATTATACGATCTAATGTTGATTTTAGAAGGGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGATCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGGTGAATGAAAAGAAAGCTCCTAATGTTTCATTGGGAGAAACTGTCAGATCAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCATTGAGGGTGATTGCAGAGCATTTGTCTGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTCCAGGTGATGGATACAGGCAAAAGAGGCAAGATTAACATTGATGAGCTACGAATTGGGTTGCATAAGCTAGGCCACCAAGTTCCTGAAGGAGATGTCCAGATACTTATGGAAGCAGGTGATGTAGACAAAGATGGGTACCTAGATTATGGAGAGTTTGTAGCCATTTCTATTCATCTGAGAAAGATAGACCATGATGAGCACCTTCACAAAGCCTTCCACTATTTTGATCAGAACCAAAGTGGATATATTGAATTGGAGGAGTTACGTAATGCCTTGGCTGATGAGGTTGATACAACAAACAAAGAAGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATATGCTATGAGGAATTTGCTGTAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCACGAGAGAGGTTTTCAAGTCTAAGCCAGAAATTGATGAAGGACGGGTCATTGCAAATGAACAATGAGGGTAGATGA 1578 0.4316 MGNCCATPSAITKRGKRKEKKKARDDGRPTKKIVVLKEPTGREIGLRYELGRELGRGEFGVTYFCKDKESGEDMACKSISKEKLRTPIDVEDVRREVEIMRHLPKHPNIVSLKDTFEDDDAVHLVMELCEGGELFDRIVARGHYTERAAAGVTKTIVEIVQMCHKHGVIHRDLKPENFLFASKKETAPLKAIDFGLSVFFKPGEKFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSNVDFRRDPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLVNEKKAPNVSLGETVRSRLMQFSVMNKLKKRALRVIAEHLSVEEVAGIKEGFQVMDTGKRGKINIDELRIGLHKLGHQVPEGDVQILMEAGDVDKDGYLDYGEFVAISIHLRKIDHDEHLHKAFHYFDQNQSGYIELEELRNALADEVDTTNKEEVINAIMHDVDTDKDGRICYEEFAVMMKAGTDWRKASRQYSRERFSSLSQKLMKDGSLQMNNEGR* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00596 525 FunFam Calcium-dependent protein kinase 7 315 491 - -
Rops6g00596 525 SUPERFAMILY Protein kinase-like (PK-like) 47 315 IPR011009 -
Rops6g00596 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Rops6g00596 525 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Rops6g00596 525 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Rops6g00596 525 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Rops6g00596 525 Pfam EF-hand domain pair 424 488 IPR002048 GO:0005509
Rops6g00596 525 FunFam calcium-dependent protein kinase 13 134 314 - -
Rops6g00596 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 483 - -
Rops6g00596 525 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Rops6g00596 525 SUPERFAMILY EF-hand 335 512 IPR011992 -
Rops6g00596 525 CDD STKc_CAMK 47 305 - -
Rops6g00596 525 FunFam Calcium-dependent protein kinase 1 50 133 - -
Rops6g00596 525 MobiDBLite consensus disorder prediction 1 29 - -
Rops6g00596 525 SMART serkin_6 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00596 525 Coils Coil 440 460 - -
Rops6g00596 525 Gene3D - 315 490 - -
Rops6g00596 525 ProSiteProfiles Protein kinase domain profile. 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00596 525 ProSiteProfiles EF-hand calcium-binding domain profile. 349 384 IPR002048 GO:0005509
Rops6g00596 525 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Rops6g00596 525 SMART efh_1 389 417 IPR002048 GO:0005509
Rops6g00596 525 SMART efh_1 462 490 IPR002048 GO:0005509
Rops6g00596 525 SMART efh_1 353 381 IPR002048 GO:0005509
Rops6g00596 525 SMART efh_1 425 453 IPR002048 GO:0005509
Rops6g00596 525 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Rops6g00596 525 Gene3D Phosphorylase Kinase; domain 1 50 133 - -
Rops6g00596 525 CDD EFh 425 488 IPR002048 GO:0005509
Rops6g00596 525 Pfam Protein kinase domain 48 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00596 525 Gene3D Transferase(Phosphotransferase) domain 1 134 314 - -
Rops6g00596 525 Pfam EF-hand domain pair 367 412 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00596 Rops-Chr6 15539250 15544854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00596 1 523 EF-hand Containing Proteins AT5G19450 75.610 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops6g00596 Pkinase 9.5e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00596 K13412 - gmx:100815320 886.33