Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00592 ATGGGAACCCCTGAATTCCCAGATCTAGGAAAGCATTGTGCTCTCTCTGATTGTAAGCTGATTGATTTCTTGCCCTTCACCTGCGATCGTTGCAACCAGGTGTATTGTTTGGAGCACCGAAGTTATATTAAACATCAGTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTTATTTGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAACCATGTTAACACCGAGTGCGACCCATCGAATTATGAGAAAGTCATGAAGAAGAAAAAATGCCCTGTCCCTGGATGCAGAGAGAAATTATCGTTCTCAAACACAATAAAGTGCAGGGACTGCATGGTAGACCATTGTTTGAAGCATCGATTCGGACCCGATCATAAATGTCCGGGGCCCAAAAAATTGGAAACAAGTTTCTCATTTATGAATCTTTTGAATAGGAATAGAAAAGAGGAGTCTAAACCCAATTCAAAGTCATCCTCCTCATCATCAAAATGGACTACAAGCTTTCTTAATGCGGCTTCTAACATTCGAGCTTCAGCCGAGGCTGGCATGTCTAAGTTGAGTGGTGAAATGAACCAAGCCTGGCAGACAGCAAGAGATGGTGGGGTGGGACAGAGCAGTGGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCAAAATTTTCCTCAGTCACAACTTTGGTGGACCATGTGCAGAAAGTTCATGAAAGGAGTGGCAACCGATCTGGGGTGAAAGTTACAATTGATGTTTGTCCTAAGTGCAGTAAAGGATTTAGAGACCCTGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGGTGGTACTTCTAGAGCATAG 867 0.4441 MGTPEFPDLGKHCALSDCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCTKADKQDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVMKKKKCPVPGCREKLSFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKLETSFSFMNLLNRNRKEESKPNSKSSSSSSKWTTSFLNAASNIRASAEAGMSKLSGEMNQAWQTARDGGVGQSSGSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSGVKVTIDVCPKCSKGFRDPVSLVEHVERDHGGTSRA* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00592 288 MobiDBLite consensus disorder prediction 154 173 - -
Rops6g00592 288 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Rops6g00592 288 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Rops6g00592 288 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Rops6g00592 288 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Rops6g00592 288 Pfam Zinc finger, C2H2 type 260 282 IPR013087 -
Rops6g00592 288 Gene3D Classic Zinc Finger 193 285 - -
Rops6g00592 288 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Rops6g00592 288 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Rops6g00592 288 ProSitePatterns Zinc finger C2H2 type domain signature. 224 245 IPR013087 -
Rops6g00592 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 287 IPR013087 -
Rops6g00592 288 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 250 - -
Rops6g00592 288 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Rops6g00592 288 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Rops6g00592 288 Gene3D - 80 151 IPR035896 -
Rops6g00592 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 250 IPR013087 -
Rops6g00592 288 Pfam C2H2-type zinc finger 223 245 - -
Rops6g00592 288 ProSitePatterns Zinc finger C2H2 type domain signature. 261 282 IPR013087 -
Rops6g00592 288 Gene3D - 2 60 IPR035896 -
Rops6g00592 288 SUPERFAMILY beta-beta-alpha zinc fingers 223 278 IPR036236 -
Rops6g00592 288 SMART c2h2final6 259 282 IPR013087 -
Rops6g00592 288 SMART c2h2final6 222 245 IPR013087 -
Rops6g00592 288 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00592 Rops-Chr6 15492230 15500382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00592 1 288 C2H2 Transcription Factor Family AT2G41835 62.976 1.47e-128 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g00592 zf-AN1 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00592 - - gmx:100786272 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00592 6 15492230 15500382 Rops6g00592 6 15492230 15500382 ECH
Rops8g02825 8 63638342 63640522 Rops6g00592 6 15492230 15500382 PCT