Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00569 ATGGAGAGTTATTTGCCGGATTTCCAATTGAAAGACAATTCCATTGAAGCTTTGAGTAAATGGAGATCTGCTGTATCTTTGGTCAAGAACAATCGCAGAAGGTTTCGCCATGTTGCAGATCTCGTCAAACGCGTCCAAGCACAGGAGAAGATTCGCAAAATACAGGGAAAGTTTCGGGCTGTTATCTATGCTCAACAGGCAGCATTGCACTTTACGGATGTTGTTGGTCATGCTGAATACAAGGTATCAGAAAAGACAAGAGAAGCTGGTTTTGGTATTGAACCAGATGATATTGCATCAATTGTTAGAAGCCATGATTACAAGAACTTCAAAAGAATTGGTGAAGTTGAAGGGATTACAAGTAAACTCTCAGTCTCAGTTGATGAAGGTGTCAGTCAAGACGTTTCTATAGCTATAGGGCTTCCCACTGAAGGCTGGCCAAAGGGTGTTTATGATGGTCTTGGAATCATACTTAGTGTGTTATTGGTAGTCTTTGTTACTGCTATCAGTGACTACCAACAATCCCTGCAATTCAGGGATTTGGACAAAGAGAAGAAAAAGATCTCTGTTCAGGTCACCAGGGATGGGAAAAGACAGAAGGTTTCAATTTATGATTTGGTAGTGGGAGATATTGTTCATTTGTCAACCGGTGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATATTCATTGCTAATTGATGAATCAAGTTTGTCAGGTGAAAGCGAACCGGTAAATATAGATGAAAAAAGATCTTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGTCAAGGGAAGATGATTGTTACAACTGTTGGCATGAGGACTGAATGGGGGAAGTTGATGGAAACTTTAAGTGAGGGAGGAGAGAATGAGACTCCACTGCAGGTGAAATTGAATGGAGTTGCAACTATTATTGGTAAAATTGGTTTGTCTTTTGCTGTGCTGACATTTGTGGTGTTGGCAGTAAGGTTTGTGGTTGAAAAAGCAGTTCATGGTGAGTTTTCTAGTTGGTCTTCAAATGATGCAATGAAGCTGCTAGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCAATTCCTGAAGGATTACCATTAGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAAGGACAGGGCACTTGTGAGACATCTTTCTGCATGTGAGACTATGGGTTCTGCTACTTGCATCTGCACAGATAAGACAGGGACTTTGACCACTAACCATATGGTGGTTAATAAAATTTGGATATGCGGAAAGGCCATGGAGATGAAAGGTAATGAGAGTGCAGACAAACTGGAAACAGAGATGTCTGAAGAAGTTCTAAGCATTCTTTTGCAAGCTATATTTCAAAATACTTCATCAGAAGTAGTTAAGGACAAAGATGGAAATAGGACAATATTGGGAACACCAACAGAATCAGCATTATTGGAATTTGGATTGCTTTCAGGTGGTGATTTTGATGCCCAACGTAGAGACTATAAGATACTTAAGATGGAACCTTTCAATTCATCCAGGAAGAAGATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAGTATTGCAAATGTGTGACAAAATTATTGATAGTAATGGAACAGCTGTTGATCTTCCTGAAGAGCAAGCAAAGAATGTCTCTGATGTTATAAATGGCTTTGCCTCTGAAGCATTAAGAACTCTTTGTTTGGCTGTAAAAGACATAAATGAAACCCAAGAAGGGGACACCAACATCCCTGATAATGGCTATACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGTGTTAAGGAAGCTGTTGAAACTTGTTTAGCAGCTGGAATAACTATTCGCATGGTCACTGGTGATAACTTAAATACAGCTAAGGCTATAGCTAAAGAATGTGGTATACTTACTGAGGATGGTGTTGCGGTAGAAGGATCAGAATTTCGTAACTTGTCTCCAGAGCAAATGAAGGATATCATACCAAGAATTCAGGTGATGGCACGATCCTTACCCCTTGACAAGCATACCTTGGTAACCAATTTGAGGAATATGTTTGGTGAGGTGGTAGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGCATAGCTGGAACCGAGGTTGCCAAAGAAAGTGCTGATGTCATTATAATGGATGATAACTTCTCTACTAGTGTCAAGGTGGTCAAATGGGGACGGGCCATATACATCAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTTGGTGCATTGGCCCTGGCTACTGAACCTCCACATGATGGACTTATGGAAAGACCCCCAGTTGGAAGGAAAGGCAGTTTTATCACCAAACCTATGTGGAGGAATATCTTTGGACAAAGTTTATATCAACTAATTGTCCTTGCGGTTCTCAATTTTGATGGGAAGAGGCTATTGAGACTTGGTGGTTCAGATGCAACTATGGTGCTCAACACTGTGATATTTAACTCATTTGTATTTTGCCAGGTATTTAATGAGATAAACAGCCGAGAAATTGAAAAGATAAACATCTTCAGAGGCATGTTTGACAGCTGGATATTTTTCGCAGTAATTTTCTCCACAGTGGCATTCCAAGTAATCATAGTAGAGTTCCTGGGAACATTTGCCAGCACAGTACCACTAAACTGGCAACTCTGGTTACTCTGTGTATTAATTGGAGCAGTTAGCATGCCTATAGCAGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATAGTACAAAGCACCATGATGGTTATGAGGCACTGCCTTCTGGTCCTGAGAGGGCATAA 2967 0.4088 MESYLPDFQLKDNSIEALSKWRSAVSLVKNNRRRFRHVADLVKRVQAQEKIRKIQGKFRAVIYAQQAALHFTDVVGHAEYKVSEKTREAGFGIEPDDIASIVRSHDYKNFKRIGEVEGITSKLSVSVDEGVSQDVSIAIGLPTEGWPKGVYDGLGIILSVLLVVFVTAISDYQQSLQFRDLDKEKKKISVQVTRDGKRQKVSIYDLVVGDIVHLSTGDQVPADGIYISGYSLLIDESSLSGESEPVNIDEKRSFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGENETPLQVKLNGVATIIGKIGLSFAVLTFVVLAVRFVVEKAVHGEFSSWSSNDAMKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMKDRALVRHLSACETMGSATCICTDKTGTLTTNHMVVNKIWICGKAMEMKGNESADKLETEMSEEVLSILLQAIFQNTSSEVVKDKDGNRTILGTPTESALLEFGLLSGGDFDAQRRDYKILKMEPFNSSRKKMSVLVGLPDGGVRAFCKGASEIVLQMCDKIIDSNGTAVDLPEEQAKNVSDVINGFASEALRTLCLAVKDINETQEGDTNIPDNGYTLIAIVGIKDPVRPGVKEAVETCLAAGITIRMVTGDNLNTAKAIAKECGILTEDGVAVEGSEFRNLSPEQMKDIIPRIQVMARSLPLDKHTLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKESADVIIMDDNFSTSVKVVKWGRAIYINIQKFVQFQLTVNIVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPHDGLMERPPVGRKGSFITKPMWRNIFGQSLYQLIVLAVLNFDGKRLLRLGGSDATMVLNTVIFNSFVFCQVFNEINSREIEKINIFRGMFDSWIFFAVIFSTVAFQVIIVEFLGTFASTVPLNWQLWLLCVLIGAVSMPIAAILKCIPVERDSTKHHDGYEALPSGPERA* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00569 988 FunFam Calcium-transporting ATPase 723 969 - -
Rops6g00569 988 SUPERFAMILY HAD-like 403 811 IPR036412 -
Rops6g00569 988 Gene3D - 13 74 - -
Rops6g00569 988 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 967 IPR023298 -
Rops6g00569 988 Gene3D - 417 607 IPR023299 GO:0000166
Rops6g00569 988 NCBIfam calcium-translocating P-type ATPase, PMCA-type 135 968 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Rops6g00569 988 PRINTS P-type cation-transporting ATPase superfamily signature 404 418 - -
Rops6g00569 988 PRINTS P-type cation-transporting ATPase superfamily signature 235 249 - -
Rops6g00569 988 PRINTS P-type cation-transporting ATPase superfamily signature 706 725 - -
Rops6g00569 988 PRINTS P-type cation-transporting ATPase superfamily signature 603 614 - -
Rops6g00569 988 PRINTS P-type cation-transporting ATPase superfamily signature 625 635 - -
Rops6g00569 988 PRINTS P-type cation-transporting ATPase superfamily signature 730 742 - -
Rops6g00569 988 FunFam Calcium-transporting ATPase 603 751 - -
Rops6g00569 988 Gene3D - 608 723 IPR023214 -
Rops6g00569 988 Pfam E1-E2 ATPase 187 383 - -
Rops6g00569 988 SFLD Haloacid Dehalogenase 386 759 - -
Rops6g00569 988 ProSitePatterns E1-E2 ATPases phosphorylation site. 406 412 IPR018303 -
Rops6g00569 988 NCBIfam HAD-IC family P-type ATPase 501 651 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g00569 988 NCBIfam HAD-IC family P-type ATPase 156 438 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g00569 988 NCBIfam HAD-IC family P-type ATPase 671 794 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g00569 988 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 410 615 IPR023299 GO:0000166
Rops6g00569 988 Pfam Ca2+-ATPase N terminal autoinhibitory domain 9 45 IPR024750 GO:0005516
Rops6g00569 988 FunFam Calcium-transporting ATPase 414 610 - -
Rops6g00569 988 CDD P-type_ATPase_Ca_PMCA-like 135 839 - -
Rops6g00569 988 PRINTS H+-transporting ATPase (proton pump) signature 706 722 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g00569 988 PRINTS H+-transporting ATPase (proton pump) signature 562 580 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g00569 988 PRINTS H+-transporting ATPase (proton pump) signature 738 763 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g00569 988 SFLD p-type atpase 386 759 IPR044492 -
Rops6g00569 988 Gene3D - 270 416 - -
Rops6g00569 988 Gene3D - 724 967 - -
Rops6g00569 988 PANTHER CATION TRANSPORTING ATPASE 135 967 - -
Rops6g00569 988 SUPERFAMILY Calcium ATPase, transduction domain A 189 285 IPR008250 -
Rops6g00569 988 Pfam Cation transporting ATPase, C-terminus 791 964 IPR006068 -
Rops6g00569 988 Pfam Cation transport ATPase (P-type) 460 544 - -
Rops6g00569 988 FunFam Calcium-transporting ATPase 13 73 - -
Rops6g00569 988 Gene3D - 189 269 - -
Rops6g00569 988 FunFam Calcium-transporting ATPase 166 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00569 Rops-Chr6 14877089 14886126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00569 57 985 Primary Pumps ATPases AT3G57330 70.576 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00569 K01537 - gmx:100785768 1597.02