Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00565 ATGGATCACACTAACAAATCCAATCACTCGCTCTCCTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAAGAGAGCAGAGATAGCCAAGTAGGTGGTGGGGCAATTGCAAATCACAGTAATGGGAATGTGCACTCAAGGGAGGTGAATTTGATGAAGAAGAGGTCGAGGTCTCAAAACAGTGACAACGAGGACAAGGGTAGTTTTTACGGGACATACATGACAGAGGAGCGATATAGATCAATGCTCGGAGACCATGTTCAGAAGTACAAGAGGAGGTCTAAGGATGCCTCTTCTAGTCCTGCACAAAATCGGGTTGCTGTCCCACTTGTCAAAAGTAACACTGGCTTAAGAGCTCGGAAGTTGGGAAACGATCACAGGGGAGGATTACATGCTGCAGAGGCTACCTCTGAATGGCGATATGATTCCAATTCTCAGAAGCCAGGAAACTACCGCGATGCAGATTCTATGCGGCAATATGGCACTGATAGGGTTATGTATGAACCTGCTATTTTAGAAATTGGGGATGGTATCACTTACAAGATTCCTCCAGTTTATGATAAGTTGGCTACAATGCTGAACCTTCCAAGCTTCTCGGATATCCATGTGGACGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTACAATGATGGCTGCTGATAAAAGGTTCGGGAATAGAAACCGAGCAGGCATGGGGGAACCCCTATCTCAATATGAATCACTTCAGGCACGAGTAAAGGCCATGTCAGATTCTAATTCACCTCACAAATTCAGTCTGAAAGTGTCTGATGTTGGTTTGAATTCATCCATTCCGGAAGGGGCTGCTGGAAGCATAAAACGATCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCCTTCCTAAGAAGCAAAAGGTAAAGAAAGATCCTGCTTCCATTGAAAAGGAGGAAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTACTTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTTAGCAGATCACTTAAATGGATTAGGGGTGCTAGTGTTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAGTAGATAAGGAGATGGCTGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTCCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAATAAGTCAAACTTGCTATCTTCAGAAGCTTCACCTATGGTAGAGGAAAATACAGATGATCAAGATGCACAGTTTGACTCTTTAGATGCTGGGCCTAAGGAGGAGGAGGAGGAGGAAGATCCAGAAGAGGCTGAGTTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAAAAGGTTGACTAGTGCTTTTGACAGTGAATGCTTGAAGCTGCGCCAGGTGGGCGAAACTGATTCACTTACACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCATCCACCATGCCAGTGGCATCCACAGTTCAGACACCTGAATTATTTAATGGTTGTCTAAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAGGCTATGGCATTTTTAGCCCATTTAGCAGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTCAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGCGGCAAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTCCACATTCTCATCACAAGCTACCAGCTATTAGTATCCGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCAAACAGCATAAGGTGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAATTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGACAGCCACGAGCAGTTTAATGAATGGTTCTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACCTTGAATGAGCACCAACTTAATAGATTGCATTCAATTCTGAAACCTTTCATGCTACGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAGGAAAACTGAGGTTATGGTGCATTGCAAATTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTACTGAACTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAATATAGTAATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACGTACTTTCACTTTGGAGAGATACTGAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATCCTGGAGGTCAAAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGACACGATGCAAAGTTCTGAGATGCTCAGTTCAGCTGTTGGTCGTGGTGTCTGCAGAGAATCTTTTCTGAAACATTTTAATATTTTTAGACCTGAAAATGTTCATCGATCTATCTTCTCGGATGGTATGATTGTTAAAAGTGGAAACTTTGGTTTTACGCATTTGATGGATTTGTCTCCCCAAGAGGTGACGTTTTTGGCCACTGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGCGATATGAAGTTGTTGACTTTCTTACGGAGACCATTGTAGACGATCATGAATGTAGTTTTCTTGAAAAAGGTAAAGTGAGAGCTGTTACACGAATGTTATTGCTGCCATCGAGATCTGAGACCAAGTTTCTTCAAAAAAGGTTTGCAACTGGGCCCACCCATGCTCCTTTCGAGGCCTTGGTCGTCTCGCATCTGGATAGGTTTTTATCTAATGCAAAGCTTCTTCACTCAGCATACACATATATCCCACCAGCTAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGAAACTTCTCATATAAAATGATCGAAGAATTACATGATCCTTGGATTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGAATGTAATGGGCCTAGAAAGCCTGATCATCCTCCTCATCATTTAATTCAAGAGATCGATTCTGAATTACCTGTTTCACAGCCTGCACTCCAGTTAACGCACAGTATTTTTGGCTCGTCACCACCTATGCGGAGTTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAGACACTTGATTTTTTATTGAAACGTTTACGGGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGATATTTAAGACTTGATGGGTCATCTACTATTCAGGATCGCAGGGACATGGTCAGAGATTTCCAGCAAAGGAATGATATTTTTGTGTTCTTGCTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACGTTAGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAAATTCTTCTTAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGCGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTCCAATTGCAACAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAGAAGAGAAAACAACCTACAAAGGGCATACGGTTAAATGAAGAAGGTGATGCATCTTTGGAAGATTTAACAAACTCCGGAGCCCAGAATACCACCGATTATGATATTTCCATGGACCCGGAGAGATCAAAGTCTAGTAATAAAAAGAGAAAAACGGCTTCAGACAAGCAAACCTCAAGATCAAAGAATTCTCAAAAGATGAATGAATATGGCATTATGCCGATAGATGACGAATTGGATGATGCCCATCTAAATACCGATCCAGTGGGCCAGAAACCGAAGAGACCAAAGAGGACAAAGAAGAATGGGAATGAAAAGTTTGAAGAGGTTTATACTGGGACTGCTACCATATTCCCAGAGCAGACCCAATTTCCTCCACGTGATTTCAGTTCTGGAGGTTCTAAAGCAGAAACATTCCAAGACAGCTGA 4605 0.4195 MDHTNKSNHSLSYSTLFNLESLMNFQLPQQDDDFDYYGNSSQDEESRDSQVGGGAIANHSNGNVHSREVNLMKKRSRSQNSDNEDKGSFYGTYMTEERYRSMLGDHVQKYKRRSKDASSSPAQNRVAVPLVKSNTGLRARKLGNDHRGGLHAAEATSEWRYDSNSQKPGNYRDADSMRQYGTDRVMYEPAILEIGDGITYKIPPVYDKLATMLNLPSFSDIHVDEFYLKGTLDLGSLATMMAADKRFGNRNRAGMGEPLSQYESLQARVKAMSDSNSPHKFSLKVSDVGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRFSENCQREVRMKVSRSLKWIRGASVRTRKLARDMLLFWKRVDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEASPMVEENTDDQDAQFDSLDAGPKEEEEEEDPEEAELKKEALKAAQEAVSKQKRLTSAFDSECLKLRQVGETDSLTQEVAGASNIDLQTPSTMPVASTVQTPELFNGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERQVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTRKTEVMVHCKLSSRQQAFYQAIKNKISLTELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYFHFGEILNSLPPPPFGELEDVYYPGGQNPISYEIPKLVYQDTMQSSEMLSSAVGRGVCRESFLKHFNIFRPENVHRSIFSDGMIVKSGNFGFTHLMDLSPQEVTFLATGSFMERLLFSMMRYEVVDFLTETIVDDHECSFLEKGKVRAVTRMLLLPSRSETKFLQKRFATGPTHAPFEALVVSHLDRFLSNAKLLHSAYTYIPPARAPPIGAHCSDRNFSYKMIEELHDPWIKRLFVGFARTSECNGPRKPDHPPHHLIQEIDSELPVSQPALQLTHSIFGSSPPMRSFDPAKLLTDSGKLQTLDFLLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIQDRRDMVRDFQQRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQVKDKQKRKQPTKGIRLNEEGDASLEDLTNSGAQNTTDYDISMDPERSKSSNKKRKTASDKQTSRSKNSQKMNEYGIMPIDDELDDAHLNTDPVGQKPKRPKRTKKNGNEKFEEVYTGTATIFPEQTQFPPRDFSSGGSKAETFQDS* 1535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00565 1534 MobiDBLite consensus disorder prediction 158 172 - -
Rops6g00565 1534 ProSiteProfiles DBINO domain profile. 358 483 IPR020838 GO:0003677
Rops6g00565 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 826 1388 IPR027417 -
Rops6g00565 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 824 IPR027417 -
Rops6g00565 1534 FunFam Putative DNA helicase INO80 568 846 - -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 1389 1534 - -
Rops6g00565 1534 CDD SF2_C_SNF 1197 1329 - -
Rops6g00565 1534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1209 1393 IPR001650 -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 33 66 - -
Rops6g00565 1534 Gene3D - 1177 1463 IPR027417 -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 1468 1485 - -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 140 176 - -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 1429 1449 - -
Rops6g00565 1534 SMART ultradead3 592 787 IPR014001 -
Rops6g00565 1534 Gene3D - 591 833 IPR038718 -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 43 66 - -
Rops6g00565 1534 Pfam Helicase conserved C-terminal domain 1207 1318 IPR001650 -
Rops6g00565 1534 Pfam DNA-binding domain 354 482 IPR020838 GO:0003677
Rops6g00565 1534 Coils Coil 430 469 - -
Rops6g00565 1534 SMART helicmild6 1235 1318 IPR001650 -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 1411 1428 - -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 1507 1534 - -
Rops6g00565 1534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 608 779 IPR014001 -
Rops6g00565 1534 Pfam SNF2-related domain 611 898 IPR000330 GO:0005524|GO:0140658
Rops6g00565 1534 Gene3D - 834 904 IPR027417 -
Rops6g00565 1534 FunFam DNA helicase INO80-like protein 1177 1429 - -
Rops6g00565 1534 PANTHER HELICASE SRCAP-RELATED 90 539 - -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 487 522 - -
Rops6g00565 1534 MobiDBLite consensus disorder prediction 1389 1410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00565 Rops-Chr6 14777692 14790987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00565 617 906 RAD5 or RAD16-like Gene Family AT5G43530 28.869 1.14e-25 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops6g00565 SNF2_N 3.6e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00565 K11665 - gmx:100780615 2538.84