Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00563 ATGGCAGAGTACGATCTAACACCACGAATGGCTCCAAATCTAGACAGGCACCTAGTTTTCCCTCTTCTCGAGTTCCTTCAAGAGAGACAACTATACAACGATGATGACATATTGAAGGCGAAGATTGAACTTCTCAACAACACCAACATGGTTGATTATGCAATGGACATTCATAAGAGTCTCTACCACACCGAAGATGTCCCTCAAGACATGGTCGAACGCAGAGCCGACGTCGTTTCACGCCTCAAGTCTCTCGAGGAAGCCGCTGCACCACTCGTTGCGTTTCTCCAGAACGCTGCTGCCGTTCAGGAATTGAGGCCTGATAAACAGTATAATCTTCAGATGCTTAAGGATAGATATCAGATTGGTCCTTTACAAATAGAGGCATTATATCAATATGCCAAATTTCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAGCTTTATGCACAAATAGTGAAAGGAGTTTGAGTGCATTGTGGGGAAAGCTGGCAGCTGAAATATTGATGCAGAATTGGGACATTGCTCTCGAAGAACTCAATCGTTTGAAGGAAATCATTGACTCAAAGAGTTTTGCTTCACCTTTGAATCAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTTATCTTTTTCAACCATGACAATGGAAGAACACAGATTATTGATCTGTTTAATCAGGACAAGTATCTAAATGCAATCCAAACTAGTGCTCCACACCTTCTACGATACTTGGCAACAGCATTCATTGTAAACAAGCGCAGGAGGCCTCAATTCAAAGATTTTATTAAAGTTATTCAACAAGAGCAGCATTCATATAAGGACCCCATCACAGAGTTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGGGCTCAAAAGAAAATGAAGGAGTGCGAAGAAGTAATTCTGAATGATCCTTTCCTTGGTAAACGAGTTGAAGAAAGCAACTTCACGACTGTACCATTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTTGAGACATACTGTAGAATACACCAACGCATTGACATGGGGGTTCTCGCTGAGAAGTTAAATTTGAATTATGAGGAGGCTGAGAGATGGATTGTGAATCTCATCCGTAGCTCAAAGCTTGACGCCAAAATTGACTCTCAAACTGGAACAGTTAGCATGGAACCCAATCATCCTAATGTGTATGAGCAGCTGATAGACCATACCAAGGCCCTTAATGGCCGTACTTACAAGTTGGTCAGTCAACTTCTGGAACATGCTCAAGCTCAACCAGCTCGATAA 1314 0.4178 MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYNDDDILKAKIELLNNTNMVDYAMDIHKSLYHTEDVPQDMVERRADVVSRLKSLEEAAAPLVAFLQNAAAVQELRPDKQYNLQMLKDRYQIGPLQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFASPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEESNFTTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSQTGTVSMEPNHPNVYEQLIDHTKALNGRTYKLVSQLLEHAQAQPAR* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00563 437 FunFam Eukaryotic translation initiation factor 3 subunit E 228 433 - -
Rops6g00563 437 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Rops6g00563 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 434 IPR016650 GO:0003743|GO:0005737|GO:0005852
Rops6g00563 437 SUPERFAMILY "Winged helix" DNA-binding domain 331 403 IPR036390 -
Rops6g00563 437 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Rops6g00563 437 Pfam PCI domain 285 399 IPR000717 -
Rops6g00563 437 CDD eIF3E 3 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Rops6g00563 437 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 IPR000717 -
Rops6g00563 437 Gene3D - 228 433 - -
Rops6g00563 437 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
Rops6g00563 437 SMART eIF3_N_2 5 137 IPR019010 -
Rops6g00563 437 PIRSF Transl_init_eIF3e 1 437 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00563 4 437 Eukaryotic Initiation Factors Gene Family AT3G57290 87.097 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00563 K03250 - gmx:100797748 843.573