Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00562 ATGGCAAAGAGGAAGAGCTGGTTTGGATGGGTGAAAAGACTTTTCACTTCTGATTTAAAAGATAAAAAGCCAAGGAAATGGGGATGGAGTTTTGGAAGGATTAAACAGAAGCAATACCCTTCAATTACAGCTCCAAACAGGACATTGATTGAAGCAAATGCAGAGCAGAGAAAGCATGCTTTGACTGTGGCTATTGCTACAGCAGCTGCTGCAGAGGCTGCAGTTGCTGCTGCACATGCTGCTGCTGAGGTTGTCAAGCTCACAGGTGCTTCTCGTTCTTATTCATATCTGTCCAAAGGAAACAGAAGTTTGGCTGCCATCAAGATTCAAAGTGCATACCGTGCACATCTTGCAAGGAAAGCATTAAGAGCATTGAAGGGAGTTATAAAACTGCAAGCCATAGTTCGTGGTCAAGCTGTGAGACGTCAAGTGTGCAGCACTTTGAAGAATTTTTCTTCCAATGCAAGAAATCAGGTGGAAATCCAGGAAAGAAGCAGCCATACTGAGGAAGAAAATTATAAAAATGACCAGATCAAGCAGTTTCCAAAGCAAAAGAAAAAATTAGAAGAGAAGGAAATGAAGCAAGAATGCCATAGAACTTGGGATTGTAGCTCTCACTCAAGAGAAGACATTGAAGCCATATGGTTAAAAAGGCAAGAGGCCATTGCCAAAAGAGAGCGCATGAAGCAATACTCTTCTTCTCAAAGGGAGAGAAAAATTCCCCAAATGGTAGAAGACTCTATGCACAACAACGAATTTGGAAGAGATAGCAGCCGTACACTAGGAGAGTGGCTACATAAAGAAACATGTGATTGGGATGTGCTTTATAAACCAGCTCTTTCTTCAAAGATTGCATTCACAAAGGAATTGCAAGAAGAAGGATTGAGTTCACAAATTTCAATCCCAAGGAAATCATTTTCTCATGTAAAAAGAAGTTCAATAGGGGATGAAAGTTCCATGCCAAATTCTCCAGTTTTTCCTAAATACATGGCTGTGACTGAATCAAGCAAAGCAAAGGTGAGGTCTATTAGCACACCAAAGCAAAGAACAGAATTTATGGATATATGCTCCAATCAGAATGAGCCTTATTATGGTGCAACTACCAGCACTAACAATAACAGTACAAATTACCAGCAGAGATGCCAGAGCTCAAATATCCATTATTATCATTAG 1173 0.4032 MAKRKSWFGWVKRLFTSDLKDKKPRKWGWSFGRIKQKQYPSITAPNRTLIEANAEQRKHALTVAIATAAAAEAAVAAAHAAAEVVKLTGASRSYSYLSKGNRSLAAIKIQSAYRAHLARKALRALKGVIKLQAIVRGQAVRRQVCSTLKNFSSNARNQVEIQERSSHTEEENYKNDQIKQFPKQKKKLEEKEMKQECHRTWDCSSHSREDIEAIWLKRQEAIAKRERMKQYSSSQRERKIPQMVEDSMHNNEFGRDSSRTLGEWLHKETCDWDVLYKPALSSKIAFTKELQEEGLSSQISIPRKSFSHVKRSSIGDESSMPNSPVFPKYMAVTESSKAKVRSISTPKQRTEFMDICSNQNEPYYGATTSTNNNSTNYQQRCQSSNIHYYH* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00562 390 Pfam Protein of unknown function (DUF4005) 315 378 IPR025064 -
Rops6g00562 390 Gene3D - 92 150 - -
Rops6g00562 390 SMART iq_5 101 123 IPR000048 GO:0005515
Rops6g00562 390 ProSiteProfiles IQ motif profile. 102 130 IPR000048 GO:0005515
Rops6g00562 390 PANTHER IQ-DOMAIN 5-RELATED 4 368 - -
Rops6g00562 390 ProSiteProfiles IQ motif profile. 126 153 IPR000048 GO:0005515
Rops6g00562 390 Pfam IQ calmodulin-binding motif 105 123 IPR000048 GO:0005515
Rops6g00562 390 Pfam IQ calmodulin-binding motif 126 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00562 Rops-Chr6 14729988 14732275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00562 1 354 IQD Protein Family AT5G03960 45.652 2.95e-70 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00562 - - gmx:100800767 507.679