Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00559 ATGGAAGTGGAGAAGGAAGATACCACATTGAGTAGTAATGAAGAATCATCTATACCAGCCTCTGATAGTCAAAATCCTGTTTCTTCTGTTCAAGCAAATTTGCCACAACCTGTTATTCCACCAGTTATTACTCCTTCTGTTGTGCCTTCTCTTGCTCCAATTCCTGCAGTCCGCCCGCTGGCATCACTTCCAGTTCGGCCACCGGTTATTAGGCCGCCCATGCCGCAAAATGGCGAGGTTGGGTCGAGTGATTCTGATTCAGACAATGATGACACGGCCACCAGGATTAACCAGGGTGGTGGGGAGTATGAAATTTCGGAGGAGAGTAGACTGGTTAGGGAGAGGCAGGAAAAGGCTATGCAAGACCTCATGATGAAGAGGCGTGCTGTTGCGCTTGCTGTTCCGACGAATGACATGGCTGTGCGAGCTCGTCTGAGACATCTTGGTGAGCCGATAACGCTATTTGGTGAGAGGGAGATGGAGAGACGAGACAGGTTGAGGATGATTATGGCAAAGCTGGATGCTGAAGGGCAGCTGGAAAAGCTGATGAAAGCTCATGAGGATGAAGAGGCTGCGGCGTCTGCTCCGAAAGATGAGGCCGAGGAAGAGTTGCAGTATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCAGGATGCCAGAATTGATATTGCTAAATATTCTTTAGTGAGGACAGCATTGCGGCTTCAACGTGCCCAGAGAAGAAGAGATGATCCTGATGAAGATCCGGATGCAGAGATGAATTGGGCATTGAAGCAGGCTGGGAATTTGAGTCTTGACTTTAGTGAAATAGGAGATGATCGACCACTTACTGGTTGCTCGTTCTCTCGGGATGGAAAATGGCTTGCTACCTGTTCTCTAACTGGAGGTGCCAAGTTGTGGAGCATGCCTGAAATCAAAAAAACTTCTACCTTTAAGGGGCACACAGAACGCGCTACTGATGTTGCTTATTCTCCTATACATAATCATTTAGCAACTGCCTCTGCTGATCGGACTGCGAGGTATTGGAATGATCAAGGATCTCTTTTGAAGACATTTGAGGGTCATCTTGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGAGAGGAGTTACTTCTCCAAGAAGGCCATAGTAGAAGTGTTTATGGTTTAACTTTCCATCATGATGGATCATTAGCTGCATCTTGTGGACTGGATGCTCTGGCTCGTGTTTGGGACCTCCGAACTGGGAAAAGTGTCCTTGCACTAGAAGGCCACGTCAAACCGATTCTTGGCATCAGTTTTTCACCTAATGGATATCATTTAGCCACGGGTGGTGAAGACAACACTTGTCGCATTTGGGATTTGAGGAAGAAGAAATCCTTGTACACCATTCCCGCTCACTCCAATTTAATATCCCAGGTTAAATTTGAGCCACAAGAGGGTTACTTTTTGGTAACTGCCTCTTATGACATGACAGCTAAGGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACCTCTCTGGATGTTCTTGGAGATGGCGGGTATATTGTTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGCAACATGACTGATGATGAACAAGCTATGGATGTTGACTAA 1701 0.4685 MEVEKEDTTLSSNEESSIPASDSQNPVSSVQANLPQPVIPPVITPSVVPSLAPIPAVRPLASLPVRPPVIRPPMPQNGEVGSSDSDSDNDDTATRINQGGGEYEISEESRLVRERQEKAMQDLMMKRRAVALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAPKDEAEEELQYPFYTEGSKSLQDARIDIAKYSLVRTALRLQRAQRRRDDPDEDPDAEMNWALKQAGNLSLDFSEIGDDRPLTGCSFSRDGKWLATCSLTGGAKLWSMPEIKKTSTFKGHTERATDVAYSPIHNHLATASADRTARYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLTFHHDGSLAASCGLDALARVWDLRTGKSVLALEGHVKPILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSNMTDDEQAMDVD* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 553 IPR001680 GO:0005515
Rops6g00559 566 SMART pr04_2 136 189 IPR014906 -
Rops6g00559 566 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 479 555 - -
Rops6g00559 566 SMART WD40_4 345 384 IPR001680 GO:0005515
Rops6g00559 566 SMART WD40_4 260 301 IPR001680 GO:0005515
Rops6g00559 566 SMART WD40_4 471 511 IPR001680 GO:0005515
Rops6g00559 566 SMART WD40_4 387 426 IPR001680 GO:0005515
Rops6g00559 566 SMART WD40_4 429 468 IPR001680 GO:0005515
Rops6g00559 566 SMART WD40_4 514 553 IPR001680 GO:0005515
Rops6g00559 566 SMART WD40_4 304 343 IPR001680 GO:0005515
Rops6g00559 566 MobiDBLite consensus disorder prediction 12 35 - -
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 343 IPR001680 GO:0005515
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 431 - -
Rops6g00559 566 SUPERFAMILY WD40 repeat-like 269 552 IPR036322 GO:0005515
Rops6g00559 566 SUPERFAMILY PRP4-like 119 174 IPR036285 -
Rops6g00559 566 Pfam WD domain, G-beta repeat 276 300 IPR001680 GO:0005515
Rops6g00559 566 Pfam WD domain, G-beta repeat 307 343 IPR001680 GO:0005515
Rops6g00559 566 Pfam WD domain, G-beta repeat 432 468 IPR001680 GO:0005515
Rops6g00559 566 Pfam WD domain, G-beta repeat 346 384 IPR001680 GO:0005515
Rops6g00559 566 Pfam WD domain, G-beta repeat 474 511 IPR001680 GO:0005515
Rops6g00559 566 Pfam WD domain, G-beta repeat 395 426 IPR001680 GO:0005515
Rops6g00559 566 Pfam WD domain, G-beta repeat 516 553 IPR001680 GO:0005515
Rops6g00559 566 CDD WD40 275 553 - -
Rops6g00559 566 Pfam pre-mRNA processing factor 4 (PRP4) like 141 167 IPR014906 -
Rops6g00559 566 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 251 435 - -
Rops6g00559 566 MobiDBLite consensus disorder prediction 1 102 - -
Rops6g00559 566 Gene3D - 251 435 IPR015943 GO:0005515
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 343 - -
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 389 - -
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 436 470 - -
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 553 - -
Rops6g00559 566 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 478 520 IPR001680 GO:0005515
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 478 511 - -
Rops6g00559 566 PANTHER WD40 REPEAT PROTEIN 86 554 - -
Rops6g00559 566 Gene3D - 436 563 IPR015943 GO:0005515
Rops6g00559 566 ProSitePatterns Trp-Asp (WD) repeats signature. 413 427 IPR019775 -
Rops6g00559 566 Gene3D - 112 181 IPR036285 -
Rops6g00559 566 Coils Coil 172 192 - -
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Rops6g00559 566 ProSitePatterns Trp-Asp (WD) repeats signature. 455 469 IPR019775 -
Rops6g00559 566 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Rops6g00559 566 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Rops6g00559 566 PRINTS G protein beta WD-40 repeat signature 455 469 IPR020472 -
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 436 477 IPR001680 GO:0005515
Rops6g00559 566 MobiDBLite consensus disorder prediction 60 74 - -
Rops6g00559 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 393 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00559 356 552 U-box Gene Family AT2G33340 22.172 7.41e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00559 K12662 - gmx:100788948 957.592