Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00548 ATGCAATCACGGCGGTGTACGACGTCAAAGGCGAGGCAGTTGTCAGAGTTGGAGAACCTCACGATGCGGTGCCCTTCATGCGAGGAGGACTATGACGCTCACGGCGCCAGAACTTGCAAGGAGTGCTACAACAAAGCCAAGCGTCATCTCCAAGACTTGAAATCGAAGGTTGAATTCCTCACTCTCACTTCTCCCTTCGATATTGTCCTTGTTCCCTCTGCTGATGCTTCTGCTTCCTCTGTTCCCACTCACAAGGCCGTTCTGATTGCTTCAGAAGGGCTCAAACATAGAGTGTTTGAGATCTCATTGGCTGATCTTCAAGGGGATGAGGAACAGGCATTCAGGAAGATTAGGTTGAGAGATGAAGATGTTCAAGGGAGGAATGTTCTGACAAATTTCTGGGGAATGGATTTCACAGCTGACAGGGTGAGGTCATTGGTGCGAAAATGGCAAACTCTGATTGAAGCACATGTGGATGTGAAAACAACTGATAATTACACATTGAGGATGTTCTGCATCGGATTTACCAAGAGGATAAGTAACCAGGTGAAGAGAACCTGTTATGCACAATCAAGCCAGATTAGACAGCAAGCTAACACCATTGCAGTTGGAAAGCCTGCTGACAGAGGGGAATACTACAAGATTGTGGCTGGTGAGTACCATGAGTTGAATGGAAATCCTTTCTGA 687 0.4687 MQSRRCTTSKARQLSELENLTMRCPSCEEDYDAHGARTCKECYNKAKRHLQDLKSKVEFLTLTSPFDIVLVPSADASASSVPTHKAVLIASEGLKHRVFEISLADLQGDEEQAFRKIRLRDEDVQGRNVLTNFWGMDFTADRVRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRISNQVKRTCYAQSSQIRQQANTIAVGKPADRGEYYKIVAGEYHELNGNPF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00548 228 ProSitePatterns Ribosomal protein S3Ae signature. 94 106 IPR018281 GO:0003735|GO:0005840|GO:0006412
Rops6g00548 228 Pfam Ribosomal S3Ae family 81 199 IPR001593 GO:0003735|GO:0005840|GO:0006412
Rops6g00548 228 PANTHER 40S RIBOSOMAL PROTEIN S3A 85 199 - -
Rops6g00548 228 Coils Coil 43 63 - -
Rops6g00548 228 SMART Ribosomal_S3Ae_2 45 219 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00548 Rops-Chr6 14498582 14500966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00548 75 196 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 73.684 2.36e-65 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00548 K02984 - qsu:112024751 204.142