Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00536 ATGTCCCTTGAAGACTCTCTAAGATCTCTATCCCTTGATTACCTTAACCTTCTCATCAATGGCCAAGCCTTCAGTGATGTCACCTTCCAAGTGGAGGGTCGTTTGGTCCACGCTCATCGCTGCATCTTAGCAGCACGAAGCCTCTTCTTCAGAAAATTCTTCTGTGGCCCGGACCCACCTTCGGGCTTGGACCCGACAGGAGCCTCTCGGGTGGGCTCGGGCCAGGCGAGGCCCGGCGTTATTCCGGTGAACTCGGTGGGGTATGAGGTGTTTTTGCTTCTGTTGCAGTTTCTGTACAGTGGACAAGTCTCTATTGTTCCTCAGAAGCATGAGCCAAGGCCTAATTGTGGTGAAAGAGGGTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCTTGGATACACTCGCTGCCGCTAGATACTTTGGGGTTGAACAGCTGGCATTGTTAACTCAGAAGCAACTAGCCAGCATGGTAGAGAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAAATGCAACAACTTTGGACCACTTGTTCCCACCTTGTTGCCAAATCAGGTCTTCCCCCTGAAGTCCTTGCCAAACACCTCCCCATCGATGTCGTGGCAAAAATCGAAGAACTTCGTCTCAAATCTTCCTTAGCACGCCGCTCCTTAATGCCACTCCACCCACACCATCACCACCACCACCACCACCATGACCTCGGTGCTGCCGACATCGAAGACCAGAAAATCCGCCGAATGAGACGAGCCCTCGACTCCTCCGATGTGGAACTTGTCAAACTCATGGTAATGGGAGAAGGCCTAAACCTCGATGAAGTATTGGCATTACACTATGCAGTTGAAAATTGCAGCAGAGAAGTTGTAAAGGCCTTGTTAGAACTCGGTGCAGCTGATGTAAACTACCCTGCTGGACCCGCCGGAAAAACTCCACTTCACATCGCCGCCGAGATGGTATCGCCGGAGATGGTGGCGGTGTTGCTTGACCACCACGCGGATCCAAACGTTCGAACGGTGGATGGTGTCACCCCTTTGGACATTCTCAGAACCCTAACCTCTGATTTCCTATTCAAAGGTGCTGTCCCTGGATTAACCCACATTGAACCAAACAAGCTTAGATTATGCTTGGAGCTTGTACAATCAGCAGCTCTTGTTCTTTCACGTGAAGAAGGTAACAATGCTAATAACCCTTCTTCTTCAACAACGTCCATTTACCCTCCAATGAGTGGAGGAGACCATAGCAGCAGTAGCAGTGGCAACAACAACATTGCTAATAACCTCAATTTGGATTCAAGGTTGGTGTATCTCAACCTTGGTGCCACCGCGGGTTCTGCTCAAATGGGTGGTGGTGGTGATGATGATAGCAGCCATAATAGTCATCAGAGGGAAGCCATGAACCGTCATGGGTCACAAGGTGGTGGATGTGACCCAACAATGTATCATCACTCTCATGACTTCTAG 1485 0.499 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGASRVGSGQARPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLMPLHPHHHHHHHHHDLGAADIEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEVLALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNANNPSSSTTSIYPPMSGGDHSSSSSGNNNIANNLNLDSRLVYLNLGATAGSAQMGGGGDDDSSHNSHQREAMNRHGSQGGGCDPTMYHHSHDF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00536 494 CDD BTB_POZ_NPR_plant 8 160 - -
Rops6g00536 494 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
Rops6g00536 494 MobiDBLite consensus disorder prediction 398 431 - -
Rops6g00536 494 ProSiteProfiles Ankyrin repeat region circular profile. 315 345 - -
Rops6g00536 494 Pfam Domain of unknown function (DUF3420) 195 257 IPR024228 -
Rops6g00536 494 SUPERFAMILY POZ domain 8 158 IPR011333 -
Rops6g00536 494 Gene3D Potassium Channel Kv1.1; Chain A 4 193 IPR011333 -
Rops6g00536 494 Pfam Ankyrin repeats (3 copies) 263 345 IPR002110 GO:0005515
Rops6g00536 494 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Rops6g00536 494 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Rops6g00536 494 SMART ANK_2a 315 344 IPR002110 GO:0005515
Rops6g00536 494 SMART ANK_2a 280 310 IPR002110 GO:0005515
Rops6g00536 494 SMART BTB_4 25 160 IPR000210 GO:0005515
Rops6g00536 494 Gene3D - 247 363 IPR036770 -
Rops6g00536 494 MobiDBLite consensus disorder prediction 453 494 - -
Rops6g00536 494 SUPERFAMILY Ankyrin repeat 274 358 IPR036770 -
Rops6g00536 494 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 493 IPR044284 GO:0099402
Rops6g00536 494 FunFam regulatory protein NPR5 isoform X1 4 193 - -
Rops6g00536 494 FunFam regulatory protein NPR5 isoform X2 246 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00536 Rops-Chr6 14168434 14172440 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops6g00536 BTB 3.8e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00536 K14508 - qsu:112012060 776.163