Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00521 ATGATCATGGTGGCAATGCAGGAGGAAATTATGATGCCTATAGTTCCTGGAGAAGGACCATTTGGTTTGATTATTTGTCCATCAACGGAACTGGCTAGGCAAACTTATGATGTGGTTGAACAATTCCTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTGAGGCCTCTGCTTTGTATTGGTGGAGTGGACATGAGATCGCAGCTTGAGATTGTGAAGAAGGGAGTTCATATTGTTGTTGCCACTCCTAGGAGGTTGAAGGATATGTTGGCCAAGAAGAACATGAATCTTGATTACTGTAGGTATTTAACAATAGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGATCACTTCTAA 384 0.4089 MIMVAMQEEIMMPIVPGEGPFGLIICPSTELARQTYDVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPRRLKDMLAKKNMNLDYCRYLTIDEADRLVDLGFEDDIREVFDHF* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00521 127 Gene3D - 2 127 IPR027417 -
Rops6g00521 127 Pfam DEAD/DEAH box helicase 18 126 IPR011545 GO:0003676|GO:0005524
Rops6g00521 127 PANTHER RNA HELICASE 11 125 - -
Rops6g00521 127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 126 IPR027417 -
Rops6g00521 127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 127 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00521 Rops-Chr6 13829701 13830084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00521 22 124 Eukaryotic Initiation Factors Gene Family AT3G13920 33.981 1.26e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00521 K13116 - gmx:100814127 242.276