Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00487 ATGGTTGCTTGCATTGCAGTGGAGTCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTTCATGGAAGGATGCATCATCTGGTCAACATGTTGAATATCAATATTCAGGGGAACAATAAGTTCCTAGAAGCTGTTACCAACATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCACTTTTTGAAAGCTTGATTGAACCATGCACTCCATTGAGGCCTATCAGAATTGATGGAGCTTTGAAGGTTGGTCAAAAGCGAGGAAGGATGCTTATAAATCTGGAAGAAGATGAGCAGCCTAAGAAGAAAGTGCGGTTGGGGAGTCCTGCTACTCAGTGGATATCAGTGTATAATGCACGTCGTCCCATGAAGCAGAGACATCACTATAATGTAGCAGACACAAGGCTCAGACAGCATGTAGACAAGGGTATTGAGGATGAGTTGTATATAAGCTGTGTGGCCTCTTCACCAAATTTGTGGGCCCTAATCGTGGATGCTGGAACAGGTGTTTCTTCCCGGGTTTATGAGTTATCACCAGCCTTCCTGCACAAGGATTGGATTATGGAGCATTGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTGAATGGGAGCTCTTTGGTTGTCATGTCCGAAGGGACTCCTTACACACAGCAGTCTTACAAAGTGAGTGAATCATTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGAATATGAGACAAGTGAGGAAATTCGCGCACGTCCTCCACCAATTATTTCTGGCCCGGTTCGTGCGACAGGCAGGGGTGGCATCAGGTTCACCATCAATGGTCATTCCTACTTCAACTTGGCCCTCATTACTAATGGTGGGGGTGCTGGTGATACCCATTGTGGGCACGTTCTGCATGTGCCATGCAGGAACAAGGAAATTCTCTTCAACCCGATGAAGCAGCCAGCCTTTCCAAACGTTTTGCCATGTTCCTCTCATGCATGCGAGAGCCATGGGGTACTGCTGGTGTTACCAGGAAAGCTAACAAAGAGATCTTGGAACTTCACTCATGCTCCCACGTCACCCACGAGCATCCAGTCTCCATCATTGGCAAAGGGGGTGGATACAATGGTTAGGGGCATGGCTTTGTCACCTCCATGGCACTCTCATCCCCCTCGAAAGACTCCTCAGAAGTCACAGTGCTGGCATCCAGGTCGACGGTCCTTGCTGCAAACTTACTTGGATGATCAAGAATGGGATTTGAGTGGCTTTGTAGACTTGATTCTGGGACAGACCACTGTAGGGACTGTTGTAAAGATAGAGGATGACGAGGACGAAGGACTTTTCGCTGTTGTTACTGCTCTTAATTTATGGAGGTATAGGGAACAAAAATGTATTATGACAATCAAGGATTTTCTCCTCCATAAAGCATGCCAAGAGAAGGGTATTTCTGATAAATTGAGATTACTTTTGGGGGAACAAGCATGTAATGTAGGTCTCCTGGTATCACAGCGTGTGGTGAACCTTCCTCCCCAGCTTTTGCCACATCTTTATGATGCCCTTTTTGATGAAGTTTCATGGGCCACAGAAGATGAGCCAACAGAGGAGCTCCGGAATTCCTTTCGGTTTAAGCATTATATAATACTTAGCAAAATTTACAAGCAAAAGAATGTAGATCAGAAAAGAAAACCGAGCAATGACAACGATGAGGAAATAGTGTATATAAAGCCTGAGGATGAAATTTTTCACAAGTTGAGCACGTGGTCCTTCGGTTTTCCATTGCACACTCAGCAGCTTGCACCTCGTGAGATGAGGAATTATAGGTCAAGGAATTACAAGGGAATAGTTCATGGTGGTGCCGCAATCTCACGAGCAGAAGGGGTCCGGGCTTTATGGAAGGGGTTGACACCTTTTGCTACACACTCAACCTTTTCGAGTTGGATTTGCTTCATGGCAACGTACCCACATGACCCCATGCAGCCACATGTGGACCGAGGAAGATGCATGGCCATCACCACACCATATACGAGGAGTGAACTTGCAACTTGCATATAA 2043 0.4523 MVACIAVESISILEKLHLKGFVHGRMHHLVNMLNINIQGNNKFLEAVTNMRFDEEPNYSKLISLFESLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRHHYNVADTRLRQHVDKGIEDELYISCVASSPNLWALIVDAGTGVSSRVYELSPAFLHKDWIMEHWEKNYYISSIAGAVNGSSLVVMSEGTPYTQQSYKVSESFPFKWINKKWKEEYETSEEIRARPPPIISGPVRATGRGGIRFTINGHSYFNLALITNGGGAGDTHCGHVLHVPCRNKEILFNPMKQPAFPNVLPCSSHACESHGVLLVLPGKLTKRSWNFTHAPTSPTSIQSPSLAKGVDTMVRGMALSPPWHSHPPRKTPQKSQCWHPGRRSLLQTYLDDQEWDLSGFVDLILGQTTVGTVVKIEDDEDEGLFAVVTALNLWRYREQKCIMTIKDFLLHKACQEKGISDKLRLLLGEQACNVGLLVSQRVVNLPPQLLPHLYDALFDEVSWATEDEPTEELRNSFRFKHYIILSKIYKQKNVDQKRKPSNDNDEEIVYIKPEDEIFHKLSTWSFGFPLHTQQLAPREMRNYRSRNYKGIVHGGAAISRAEGVRALWKGLTPFATHSTFSSWICFMATYPHDPMQPHVDRGRCMAITTPYTRSELATCI* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00487 680 SUPERFAMILY Mitochondrial carrier 602 653 IPR023395 -
Rops6g00487 680 PRINTS Expansin signature 281 302 IPR002963 GO:0009664
Rops6g00487 680 PRINTS Expansin signature 269 281 IPR002963 GO:0009664
Rops6g00487 680 Gene3D Mitochondrial carrier domain 586 652 IPR023395 -
Rops6g00487 680 Pfam BCCIP 403 578 IPR025602 -
Rops6g00487 680 PANTHER BRCA2 AND CDKN1A INTERACTING PROTEIN 403 603 IPR025602 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00487 Rops-Chr6 13045904 13048523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00487 245 296 Expansin Gene Family AT3G29030 55.769 4.38e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00487 - - gmx:100801967 395.971