Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00481 ATGCTCTCTCAGACTCAGTCATGTACTATGATTGCAACAATAATATTTGTTCTGGCACAAATAATTGTGAAAGCAAATTCACTTTCAGAAGCTGATAAGATAAGCCTTTTGCCTGGGCAGCCACCAGTGAAATTCCAGCAGTATGCTGGTTACATTACAGTTGATGAGGAGCAGCAAAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAATAGAACCAGCTTCCAAGCCAATAGTGCTATGGTTAAATGGAGGGCCTGGTTGTTCCTCTATTGGAGCTGGAGCTTTTGTTGAGCAGGGCCCTTTCAAACCAACTGAAAATGGTCTTGTAAAAAATGATTACAGCTGGAACAAAGAGGGAAATATGCTGTACTTGGAATCACCGGCTGGTGTTGGTTTCTCCTACTCTGCTAATAAATCTTTCTATGACTTTGTGACCGATGAAATGACAGCAAGGGATAATCTTGTTTTCCTACAGCGTTGGTTCGATAAATTCCCAGAGTACAAGAACAATGACTTTTTTATCACAGGGGAGAGCTATGCAGGTCACTATGTACCCCAACTTGCGCAACTCATAGTTCAAACCAAGACAAAGTTCAATCTCAAGGGGATAGCCATAGGGAATCCTCTTCTGGAATTTAACACGGATTTTAACTCCAGAGCAGAGTTTTTCTGGTCCCATGGACTGATATCTGATTCCACCTATGAAATCTTCACTAAAGTATGCAACTATTCCCAAATTAGAAGACAATATCAAAGTGGAACACTTACTCCCGTTTGTGCAGGAGTAAATAAACTAGTGTCATCGGAGGTTAGCAGATACATTGATAACTATGATGTTACTCTTGATGTCTGTCTACCGTCAGAAAAACAACAGGCCTATATGCTGAATCAACTCACTCAATTGCAAGAGGGAGAGAAGTTAGACGTTTGTGTGGAAGATGAAACATTGACATACTTGAACAGGAAAGAAGTGCAAGAAGCTCTCCACGCTAAGCTTGTAGGGATCACCAAATGGTCAACTTGCAGCGAGATTCTTAAATATGACATGCAGAATCTAGAGATTCCAACCATTTCTATTCTAGGGGCACTTGTTAAGTCAGGTATCAGGGTTCTAGTATACAGTGGAGATCAAGATTCAGTCATACCATTAATTGGGACACGATCTCTGGTTAATGGACTAGCCAAGGAGTTTGGGCTGAATACAACAGTGCCCTATAGAGCCTGGTTTAAGGGTAGACAGGTAGCTGGGTGGACTCAAGTATATGGTGACATCTTATCTTTTGCCACCATAAGAGGAGCAGCTCATGAAGCTCCATTTTCACAACCAGAGAGATCATTAGTGCTGCTAAAAGCATTTTTGGAAGGAAAGACACTTCCAGAACCTATTACCTGA 1395 0.4129 MLSQTQSCTMIATIIFVLAQIIVKANSLSEADKISLLPGQPPVKFQQYAGYITVDEEQQRALFYYFVEAEIEPASKPIVLWLNGGPGCSSIGAGAFVEQGPFKPTENGLVKNDYSWNKEGNMLYLESPAGVGFSYSANKSFYDFVTDEMTARDNLVFLQRWFDKFPEYKNNDFFITGESYAGHYVPQLAQLIVQTKTKFNLKGIAIGNPLLEFNTDFNSRAEFFWSHGLISDSTYEIFTKVCNYSQIRRQYQSGTLTPVCAGVNKLVSSEVSRYIDNYDVTLDVCLPSEKQQAYMLNQLTQLQEGEKLDVCVEDETLTYLNRKEVQEALHAKLVGITKWSTCSEILKYDMQNLEIPTISILGALVKSGIRVLVYSGDQDSVIPLIGTRSLVNGLAKEFGLNTTVPYRAWFKGRQVAGWTQVYGDILSFATIRGAAHEAPFSQPERSLVLLKAFLEGKTLPEPIT* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00481 464 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 443 IPR001563 GO:0004185|GO:0006508
Rops6g00481 464 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Rops6g00481 464 FunFam Carboxypeptidase 357 456 - -
Rops6g00481 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Rops6g00481 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Rops6g00481 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Rops6g00481 464 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Rops6g00481 464 Pfam Serine carboxypeptidase 38 456 IPR001563 GO:0004185|GO:0006508
Rops6g00481 464 Gene3D alpha/beta hydrolase 28 286 IPR029058 -
Rops6g00481 464 Gene3D - 311 346 - -
Rops6g00481 464 FunFam Carboxypeptidase 27 460 - -
Rops6g00481 464 SUPERFAMILY alpha/beta-Hydrolases 41 459 IPR029058 -
Rops6g00481 464 Gene3D - 358 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00481 Rops-Chr6 12881525 12885176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00481 319 459 Calmodulin-binding Proteins AT2G22960 29.078 9.68e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00481 K16297 - gmx:100805028 832.017