Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00480 ATGGCATCAAGCTCAATGTCATCTTGTGGCTCATGGAGTGTCAAAGACAACAAAGCCTTTGAAAGGGCTCTTGCTGTTTATGACAAGGACACCCCTGACCGTTGGCACAATGTTGCTCGAGCTGTTGGTGGGAAAACACCAGAGGAAGTGAAGAGGCACTATGAGCTCCTTGTCCAAGACATTAGGAACATTGAATCAGGGCAAGTGCCATTCCCAAATTACAAGGAAAGGGAAGGGTCTGATGAGGGGAAAAGGTTCAGAAACCAGAAGCTCCAGTGA 279 0.4767 MASSSMSSCGSWSVKDNKAFERALAVYDKDTPDRWHNVARAVGGKTPEEVKRHYELLVQDIRNIESGQVPFPNYKEREGSDEGKRFRNQKLQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00480 92 Gene3D - 2 71 - -
Rops6g00480 92 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Rops6g00480 92 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Rops6g00480 92 CDD SANT 18 58 IPR001005 -
Rops6g00480 92 MobiDBLite consensus disorder prediction 68 92 - -
Rops6g00480 92 FunFam Transcription factor SRM1 4 71 - -
Rops6g00480 92 SMART sant 8 60 IPR001005 -
Rops6g00480 92 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Rops6g00480 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 84 IPR044636 GO:0003700
Rops6g00480 92 MobiDBLite consensus disorder prediction 75 92 - -
Rops6g00480 92 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00480 Rops-Chr6 12853172 12854452 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops6g00480 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00480 - - gmx:100804396 148.673