Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00478 ATGATGCTGGCATTATCCCCTCCTATGTTCTGGCCCATTGAGGAGTCCATAAGTCATAACCAGAAGAACTATTTCTACAAAGACACAGAAGAACTATTTCTTCATCAGTTGTGTTCATCTCAGACACAGGTTGAGGTAGAAAGATCTACTCCCTCACCTGTCTTAAGCAGCGACCTTACAATGGTCAAGAAGCTCATCCACAATGCTAGTGAACGCGATCGTCGCAAGAAGATCAATGTGTTGTGTTCTTCACTTCGTTCACTTCTTCCTGTGGCAGATCAAATGAGGAAGTTGAGTATTCCAGCAACAATTTCAAGAGTCATAAAATACATACCAGAGTTACAACAGCAAGTGGAAAGGCTAACCAAGAAAAAGGAAGAGATTTTATTGAGAATTTCTCGGCAAGGGGATGCAGTGATTAGTAAAGAATCTCCAACGAAGATTGCCCACTACAACTCTGGTTTTGTAGTTTCAACAAGTAGGCTCAATGATAGTGAGGCTGCTATTCAGATTTCATCTTATATGGTCAACAAGATTCCACTATCTGAAATCTTGCTGTGTTTAGAAAATGATGGCCTTGCACTGCTAAATGTTTCTTCCTCTGAGACCTTTGGTGGCAGGGTCTTCTATAACTTGCATTTCCAGGTGGATAAAACACAGAGATTAGAATCCGAGATTCTATATGAGAAGCTCTTGACAATAATTGAGAAAGAAGGAGACTTTAGAATAAAATGA 735 0.4 MMLALSPPMFWPIEESISHNQKNYFYKDTEELFLHQLCSSQTQVEVERSTPSPVLSSDLTMVKKLIHNASERDRRKKINVLCSSLRSLLPVADQMRKLSIPATISRVIKYIPELQQQVERLTKKKEEILLRISRQGDAVISKESPTKIAHYNSGFVVSTSRLNDSEAAIQISSYMVNKIPLSEILLCLENDGLALLNVSSSETFGGRVFYNLHFQVDKTQRLESEILYEKLLTIIEKEGDFRIK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00478 244 SMART finulus 68 120 IPR011598 GO:0046983
Rops6g00478 244 Coils Coil 111 131 - -
Rops6g00478 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 47 230 - -
Rops6g00478 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 131 IPR036638 GO:0046983
Rops6g00478 244 CDD bHLH_AtORG2_like 63 135 - -
Rops6g00478 244 FunFam Transcription factor ORG2 58 143 - -
Rops6g00478 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 114 IPR011598 GO:0046983
Rops6g00478 244 Pfam Helix-loop-helix DNA-binding domain 64 115 IPR011598 GO:0046983
Rops6g00478 244 Gene3D - 57 140 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00478 Rops-Chr6 12824438 12826316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00478 2 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.701 4.80e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g00478 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00478 - - gmx:100803424 280.026