Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00476 ATGTCAAATAGTGGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCTGTTCGACTGGGACGGCGGGCTATGGTTTGCCCTGGCTGTAATGAGGGATTTATTCAAGAACTTAATGATATGGTGCATGTTAACCCTCTAGACTTGTTTGGACTGGACAACAACAATGAAGAACGCGGCCAAAGGTTTGGGCTCGTGGAAACCTTCTCAGCCTTGATGAGGCATCAAATGGCTGATAGAAGCCATAGCCATGATGATATCAGGGCACGATCAGATTCAATTCCTGAACACAGTCCAGGGTTTGCTCCTTTGTTGATCTTTGGTGGCCAAATTCCTTTCAGATTGTCTGGAAATGGTGGCTTTGAAGCTCTTTTTAATGGGACTCCGGGAATTGGTCTGACACGAGGTAACACCGGTGATTATTTTATTGGTCCTGGACTTGAAGAACTGTTTGAACAGCTTTCAGTTAATAACCGGCAAGGACCCCCACCTGCATCCAGGTCATCCATAGATGCAATGCCTACTATCAAAATCGCGCAGAAACATCTCCGGTCAGAATCACATTGTCCAGTATGCAAAGATAAATTTGAGTTGGGGTCTGAAGCAAGACAAATGCCATGTAATCATATGTATCACTCAGATTGTATTGTTCCCTGGTTGGTTCAGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCACCGCAAGGATTGAGTAGTAACCGTGGCTCAAATGGTAGAGGTAGAAGCAGTTTTAGTAGCAGTAGCAATGGAAGGGTAAGTGGTAGGGAGAACCACGGAAGGCGAAATCCCTTTTCATTTTTGTGGCCTTTCCGCTCTGCTAATTCTAGCAGTAATGGAGCAACCGGAAGCAGCTCACCAACACCAACTATCCCTGAGAATAGCCATCATACAGGGTATTCTGGGTGGCCATTTGAATGA 939 0.4579 MSNSGNTHWCYSCRRPVRLGRRAMVCPGCNEGFIQELNDMVHVNPLDLFGLDNNNEERGQRFGLVETFSALMRHQMADRSHSHDDIRARSDSIPEHSPGFAPLLIFGGQIPFRLSGNGGFEALFNGTPGIGLTRGNTGDYFIGPGLEELFEQLSVNNRQGPPPASRSSIDAMPTIKIAQKHLRSESHCPVCKDKFELGSEARQMPCNHMYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGSNGRGRSSFSSSSNGRVSGRENHGRRNPFSFLWPFRSANSSSNGATGSSSPTPTIPENSHHTGYSGWPFE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00476 312 FunFam E3 ubiquitin-protein ligase RING1-like 151 235 - -
Rops6g00476 312 SUPERFAMILY RING/U-box 168 235 - -
Rops6g00476 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Rops6g00476 312 MobiDBLite consensus disorder prediction 235 312 - -
Rops6g00476 312 MobiDBLite consensus disorder prediction 275 303 - -
Rops6g00476 312 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Rops6g00476 312 Pfam Ring finger domain 187 229 IPR001841 -
Rops6g00476 312 CDD RING-H2_RNF126-like 188 229 - -
Rops6g00476 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 85 233 - -
Rops6g00476 312 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Rops6g00476 312 SMART ring_2 188 228 IPR001841 -
Rops6g00476 312 MobiDBLite consensus disorder prediction 235 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00476 Rops-Chr6 12776656 12778708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00476 123 242 C3H Transcription Factor Family AT5G01980 42.742 4.65e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00476 K11982 - gmx:100787523 515.768