Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00462 ATGGGGATTGAGATTGTGGAACCAAACACATGCATTAGGGGTTGTTGCACCAGTTCCTCTATTCCTCTCCATCTATCTCCTTCCTCTTATACTCTTCTCTCACCTATTGCCAGAGGGGCTGAGAGTGTTGTTTATGAAGGCACTTTGGATGGCAAGAAGGTTGCTGTGAAGAAACCCATCTTGTCAGTTTCAGAAGACATTAATAAGTTTCATAAAGAGTTGCAATTGCTGTGCAAGCTAGATCACTCTGGAATAGCAGCACTGATTGCTGCCCATGCGAAACCACCCAATTACATGTTTTTCTTCAAGTTATATGAATCTTCGAATCTCGCACAGAAGTTACATGTGGAAGAATGGGTCCCGACTATCAATCATGCACTTATGATAACAATGCAGTTAGCAAAGGCTTTACAATATCTGCATAACCTCGGGATTGTACATAGAGACGTGAAACCAGCAAATATTCTTCTTGACGAAAATCTTTGTCCACACCTCACAGATTTTGGTTTGGCAGAATACAAGAATGATATTAAGGAGTTTCTCTTAAGAATTGGAAGTCTTCTGGAAAGCCTACTGGAGTTACACACCGAAAAGTCAGATGTATACAGTTTTGGGGTATCGATCAATGAACTACATACTGGTGTTGTGCCATATACTGATCTTCGTGCAGAAGCACAGGCTCACACAGTACTTGAGATGAACTATACTGAGCAGCAACTAACAGCAGCTGTTGTTTCTGATGGATTACGGCCTGTCCTTGCTAGTGAGGAGTTGGGTATACCATCAAGATTATTATCATTGATACAGAAGTGTTGGGATGCAAATCCTAAAAGCAGACCTTCCTTTGATGATATTGTCGAGGAACTTGATTTTATTATGGAGCACAGAAAAATAAAGAAGGTAGAAGATATGCATATCAGACCTTGTAACTTGCATGTTGATCAACTTGTGGACAAGGCTTACCTTCAGGCTTATCAAGAGAGTATTATCTGGTCTACTCAAGGTGAACTTTTGGCCAGGAATGGCTCTAGTGCAACTGATTCTGGTTTGAGAACATGGCATGAATCTTATGATGAGTCTTCGGCATACCATCCAATACTGTCTTGGGGATCTTATGCTACCTGTGGGAGAAGAGAGACTATGGAGGACACGCATTTCATTCTGCCCCATATTTGCAATGAAAAGGATGTCTATGCTTTTGGTATCTTTGATGGCCACAGAGGTGCAGCAGCTGCTGAGTTTTCTTCTAGAGCTGTACCAGCAATTTTGCAAACTTCAAGTTTTACGAGCAGTCCTGCTAATGCACTAGTGGAAGCATTCCTTAGGACAGATGCTGCCTTTAGAGAAGAGCTTGATTCCTATCGCAAATCCAGCAGATGTATCCAGAAGGATTGGCATCCTGGTTGTACAGCAATTGCTGCTCTTGTAGTCAGGAACAAGCTATTTGTTGCTAACAGTGGGGATTGCAGGGCAATCTTATGTCGTGTTGGTAATCCCATTGCTCTAAGTAAGGATCATGTTGCAAGCTGTCTTCAAGAGAGAGAGCGTGTTATAAGTCATGGGGGCCATGTACATTGGCAAGTTGATACCTGGAGAGTTGGTCTTCCTGCACTTCAGGTTACTCGTTCTATTGGTGACGATGATCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACCGAGAATACCTTATGTGCAGAGGATGAATTTCTGGTCATGGCTAGTGATGGCCTCTGGGATGTCATAAGCAGTATGGAGGTCATAAATATAATAAAAGACACTGTTAAAGAGCCTGGAATGTGCTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGTGGCAGCAAAGATAACATTACAGTAATTGTCGTTTTTCTTCGTCCTGTATCTACTGCAGAGAGAATTTATTAG 1908 0.423 MGIEIVEPNTCIRGCCTSSSIPLHLSPSSYTLLSPIARGAESVVYEGTLDGKKVAVKKPILSVSEDINKFHKELQLLCKLDHSGIAALIAAHAKPPNYMFFFKLYESSNLAQKLHVEEWVPTINHALMITMQLAKALQYLHNLGIVHRDVKPANILLDENLCPHLTDFGLAEYKNDIKEFLLRIGSLLESLLELHTEKSDVYSFGVSINELHTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVVSDGLRPVLASEELGIPSRLLSLIQKCWDANPKSRPSFDDIVEELDFIMEHRKIKKVEDMHIRPCNLHVDQLVDKAYLQAYQESIIWSTQGELLARNGSSATDSGLRTWHESYDESSAYHPILSWGSYATCGRRETMEDTHFILPHICNEKDVYAFGIFDGHRGAAAAEFSSRAVPAILQTSSFTSSPANALVEAFLRTDAAFREELDSYRKSSRCIQKDWHPGCTAIAALVVRNKLFVANSGDCRAILCRVGNPIALSKDHVASCLQERERVISHGGHVHWQVDTWRVGLPALQVTRSIGDDDLKPAVTAEPEITENTLCAEDEFLVMASDGLWDVISSMEVINIIKDTVKEPGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00462 635 ProSiteProfiles PPM-type phosphatase domain profile. 368 625 IPR001932 -
Rops6g00462 635 SUPERFAMILY Protein kinase-like (PK-like) 23 310 IPR011009 -
Rops6g00462 635 ProSiteProfiles Protein kinase domain profile. 30 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00462 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Rops6g00462 635 Pfam Protein tyrosine and serine/threonine kinase 33 289 IPR001245 GO:0004672|GO:0006468
Rops6g00462 635 SMART PP2C_SIG_2 383 625 IPR001932 -
Rops6g00462 635 CDD PP2Cc 370 625 IPR001932 -
Rops6g00462 635 Pfam Protein phosphatase 2C 373 618 IPR001932 -
Rops6g00462 635 SMART serkin_6 30 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00462 635 Gene3D Transferase(Phosphotransferase) domain 1 18 317 - -
Rops6g00462 635 Gene3D - 359 630 IPR036457 -
Rops6g00462 635 SMART PP2C_4 358 623 IPR001932 -
Rops6g00462 635 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 359 629 - -
Rops6g00462 635 PANTHER PROTEIN PHOSPHATASE 346 623 IPR015655 GO:0004722|GO:0006470
Rops6g00462 635 SUPERFAMILY PP2C-like 356 627 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00462 Rops-Chr6 12431494 12440361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00462 99 635 PP2C-type Phosphatase Gene Family AT2G40860 60.924 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Rops6g00462 PK_Tyr_Ser-Thr 1.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00462 - - gmx:100785390 1076.23