Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00460 ATGAGAGAAGAAGACACCTCAAACTGGTTCTCAAGATGGGAAGAAGAACTCCCTTCCCCAGAGGAATTAATGCCTTTATCCCAAACCCTAATAAGCCCCGATCTCGCCATAGCTTTTGACATAAGAAACACATCACAACAACACCACGTGCTTCCTCCTTCATCAAACCCTCTACCTTCTCCGGCCAACCCGAGCCAACCTGGTTCCGCGGATTCCGTGGAGATGGGTTCTGGGTCGGCCGGAGAAGAACCCGCGCGGACCCTCAAACGACCGCGTTTAGTGTGGACCCCACAGCTTCACAAGAGATTTGTGGATGCTGTGGCACACTTGGGGATCAAGAATGCAGTGCCCAAAACCATAATGCAGTTCATGAGTGTTGAAGGGTTGACAAGGGAAAATGTTGCAAGTCACTTGCAAAAATATCGCCTCTATTTGAAGCGCATGCAGGGATTTTCTACGGTGGGAGGTGGAGTTGTCTCCGTTGATCCCGCTACGGACAATTTATTTGCCAGCTCGCCGGTGCCGCCGCATTTCTTGCCGTTTGTTACGGTTCCGGCACTGCAGCAGCAGCAGCAGCAGATGGTGGCGGCGGTTGCTGGCGGCCACCTGCAGTTTCACAGGCAGGTGGGCCATTTTGATGTTCCCTTCCTTTCAATTTCAAGGCAGCCTCAGGGTCAATACATTATGGGGGCACCGGTGCATAATCCGGTGACTGGTCATGCTGAGGACATGGAATCGGCTAATGTTTTGGGAGGGAGAAAGGTTCTTACTTTGTTTCCAACTGGAGATGATTGA 795 0.517 MREEDTSNWFSRWEEELPSPEELMPLSQTLISPDLAIAFDIRNTSQQHHVLPPSSNPLPSPANPSQPGSADSVEMGSGSAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQFMSVEGLTRENVASHLQKYRLYLKRMQGFSTVGGGVVSVDPATDNLFASSPVPPHFLPFVTVPALQQQQQQMVAAVAGGHLQFHRQVGHFDVPFLSISRQPQGQYIMGAPVHNPVTGHAEDMESANVLGGRKVLTLFPTGDD* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00460 264 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 199 IPR044841 GO:0003700|GO:0006355
Rops6g00460 264 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g00460 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 143 IPR006447 GO:0003677
Rops6g00460 264 SUPERFAMILY Homeodomain-like 87 147 IPR009057 -
Rops6g00460 264 Pfam Myb-like DNA-binding domain 94 142 IPR001005 -
Rops6g00460 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 146 IPR017930 -
Rops6g00460 264 MobiDBLite consensus disorder prediction 43 89 - -
Rops6g00460 264 FunFam Two-component response regulator 86 149 - -
Rops6g00460 264 Gene3D - 87 149 - -
Rops6g00460 264 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00460 Rops-Chr6 12403978 12404772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00460 1 264 G2-like Transcription Factor Family AT3G10760 54.572 3.70e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops6g00460 Myb_DNA-binding 2.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00460 - - jre:108983410 328.176