Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00457 ATGGTATTTTCTAGACAGCATGGAGGAGGTGTTGGAAGTGGTTGGGAAAACAGCCAAGGCTTCACCTTCCAAGTCCTTACAGGAAGATGGTTCATGATGTTTTCTTCATTTATGATAATGTCAGTATCTGGAGCAAGCTACATGTTTGGCCTCTACTCAAGAGAAATCAAGTCAGTTTTGGGTTATGACCAATCCACTCTCACTCTCTTAAGTTTCTTCAAGGATTTGGGGTCTAACATGGGCATTATTTCAGGCCTAATCAATGAAGTCACACCCCCTTGGGTTGTCTTAACAATTGGTGGGGTTCTCAACTTTTTTGGGTATTTCATGATTTGGCTTGCTGTGACCAAAAAAATTGCCAAACCCCCAGTATGGATCATGTGCTTGTACATCTTTATTGGAGCCAATTCTCATTGTTCAACCAACACTGGAGTTGTGGTCACCAGTGTAAAGAACTTCCCTGGCACTAGAGGCATTGTCATAGGCCTTTTGAGTGGGTATCTTGGTTTGAGTGCAGCTATCATCACTCAGCTGTACTATGCTTTCTATGGAAATGACTCTAAATCTCTAATTTTGCTTATGGCTTGGTTACCAACTGCTACAACTTTTGTTTTTCTACCAGTTATCAGGCACCACAAGGGAGTTCAACAGCCAAATCATTCCAAAGCTTTCTATAATTTCCTCTACATGACTTTAGTCCTTGCAGGGTTCCTCATGATAGTGATCATAGTGCAAAAATGTTTCAACTTTACACACAGTGAGTATTATGTCACTTCTACCATGATGCTTCTCTTGCTCATCCTACCACTTGTTGTTGTTATTATTGAAGAAAACAATATTTGGAAGAGGAAACAAGGACACATCAATAGTGAAGATCCTCCTAAGCCTTTGAATATAACTACAGAGATGCCAAATCTACAGAAATCTCCACAGGCTCCCCAAGCAAAAGAGACTACCCAAAAGCAAGTTTCTTGTTGGAGAAACATACTCAAGCCCCCAAGTAGAGGTGAAGACCACACAATACTTCAAGCCCTTTTCAGCCTTGACATGGTGATTCTTTTCTTAGCCACAATTTGTGGACTTGGTGGCACACTCACTGTGGTAAATAACTTAAGTCAGATAGGGTTATCTTTAGGATATCCTTCACACAGTATAACCACATTTGTGTCCCTTATGGCCATTTGGATCTATATGGGTAAAATTGTACAAGGGGTTGTCTCAGAATATATCATAACCAAATATAAAGTCCCTAGGCCTTTGATACTCACAATAATCCTTGTATTAGCTTGTGGTGGTCACCTTCTAATTGCTTTTGATGTCCCAAATGGTCTCTATGCAGCCTCAATTATTGTTGGGTTCTGCTTTGGAGCAAACTGGCCATTACTATTTACCATCATATCTGAACTTTTTGGTCTCAAATTTTATTCAACTTTGTACAATGTTGGGTCAATGACAAGTCCAATTGGGTCATATTTGTTCAGTTTGAGGGTTGCAGGGCATTTGTATGACAGGGAAGGCAAAAGCAAATGGCAGCATTAG 1539 0.4022 MVFSRQHGGGVGSGWENSQGFTFQVLTGRWFMMFSSFMIMSVSGASYMFGLYSREIKSVLGYDQSTLTLLSFFKDLGSNMGIISGLINEVTPPWVVLTIGGVLNFFGYFMIWLAVTKKIAKPPVWIMCLYIFIGANSHCSTNTGVVVTSVKNFPGTRGIVIGLLSGYLGLSAAIITQLYYAFYGNDSKSLILLMAWLPTATTFVFLPVIRHHKGVQQPNHSKAFYNFLYMTLVLAGFLMIVIIVQKCFNFTHSEYYVTSTMMLLLLILPLVVVIIEENNIWKRKQGHINSEDPPKPLNITTEMPNLQKSPQAPQAKETTQKQVSCWRNILKPPSRGEDHTILQALFSLDMVILFLATICGLGGTLTVVNNLSQIGLSLGYPSHSITTFVSLMAIWIYMGKIVQGVVSEYIITKYKVPRPLILTIILVLACGGHLLIAFDVPNGLYAASIIVGFCFGANWPLLFTIISELFGLKFYSTLYNVGSMTSPIGSYLFSLRVAGHLYDREGKSKWQH* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00457 512 SUPERFAMILY MFS general substrate transporter 21 217 IPR036259 -
Rops6g00457 512 Pfam Nodulin-like 29 274 IPR010658 -
Rops6g00457 512 SUPERFAMILY MFS general substrate transporter 219 503 IPR036259 -
Rops6g00457 512 CDD MFS_Mch1p_like 28 506 - -
Rops6g00457 512 Gene3D MFS general substrate transporter like domains 291 509 IPR036259 -
Rops6g00457 512 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 30 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00457 Rops-Chr6 12349046 12351106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00457 19 511 Nodulin-like Gene Family AT2G39210 60.521 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00457 - - gmx:100789645 820.076