Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00453 ATGCAGTCCAAGATTGTTAATTTCACTATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTACATTTATGATTATTTGGTGAAGAAAAAGTTGCACAACACTGCCAAGTCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAATGGTGGTCTGTTTTCTGGGATATTTTTATTGCGAGGACAAATGAGAAACATTCTGAGACTGCTGCGGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAACAATTGCAAATGCAGCAGTTGCAATTAATGCGTCAAGCTCAGCTGCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGTCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCTGCCAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTCTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACAGCAGCTCTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTGAGATCAAAGGTGAAGTCAACATGGGCACCATGCAGAGATCCTTGCCTATGGATCCTTCTTCAATTTATGGGCAGGGAGGAATGCAGTCAAAGCCTGGAAACACAAATGCAGGATTAAATCCAGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGAATAGATCAAATTCGTCCTGGTTTTGGAGCACAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAACAACAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCACCGGTGTATGGAGATATGGATCCACAGAGGTTGAGGGGATTGGCTAGGGGGAATTTGAACGTGAAAGACAGTCAACCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATGCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAACTGGTGCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCGGGAGCTGCCAACAGTACTGGTACAGGAAATACACTTGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCCGGTGATGGAGTTGCCATGGCGGGTAACTTGCAGAATGTTGCTGGTGTTTCCAAAGGTTTGATGATGTATGGTGCTGAAGGAGCAGGTGGTCTTGCATCTTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCGCAGGATGATGGTGATGGAAGGGACTTGTTTGGCTCGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAGTGAAGTTGGTTCGATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACGGAGAGCACACCGGAGGGACACTCTCTTATTATTACTGACGTTCGCTTCAGACCGAATTCCACTCAGCTGGCAACATCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCCTTTCAGGCATATAATGGTCATACTTCACATGTGGTGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGCTTCTGGAGTATTAGTCAATATTCTTGCACTCGGGCTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGATTGGACACCTTCTGGCTGCAGCATCTGGCAGTGTTGTGTCTCTCTTCGATGTTGAGACTGACAGGCAGATGCATTCATTACAGGGACACTCTTCAGAGGTACACTGTGTATGTTGGGATACAAATGGAGAATACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCCACTGGTGAATGCATTCATGAACTTAATTCCAGTGGAAACATATTTCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGGGGATACCAGTCATTGGAGCTATGGAACATGGCCGAGAATAAATGTATGACAATACCAGCTCATGAGTGTTTAATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCTAGTCATGACAAATCTGTAAAGATTTGGAAATAA 2385 0.4436 MQSKIVNFTMAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPEIKGEVNMGTMQRSLPMDPSSIYGQGGMQSKPGNTNAGLNPGVGGLTLKGWPLTGIDQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLARGNLNVKDSQPIANDGSIGSPMQSTSSKINMPQMQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMYGAEGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGSLKRNPSEHATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEGHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSFQAYNGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWSISQYSCTRAFKGGSTQVRFQPRIGHLLAAASGSVVSLFDVETDRQMHSLQGHSSEVHCVCWDTNGEYLASVSQESVKVWSLATGECIHELNSSGNIFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECLISALAQSPVTGMVASASHDKSVKIWK* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 680 720 IPR001680 GO:0005515
Rops6g00453 794 SUPERFAMILY WD40 repeat-like 507 794 IPR036322 GO:0005515
Rops6g00453 794 Gene3D - 647 794 IPR015943 GO:0005515
Rops6g00453 794 Gene3D - 489 646 IPR015943 GO:0005515
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 598 633 - -
Rops6g00453 794 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 794 IPR044716 GO:0003714
Rops6g00453 794 CDD WD40 509 794 - -
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 555 587 - -
Rops6g00453 794 Coils Coil 96 116 - -
Rops6g00453 794 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 513 554 IPR001680 GO:0005515
Rops6g00453 794 SMART WD40_4 506 545 IPR001680 GO:0005515
Rops6g00453 794 SMART WD40_4 714 753 IPR001680 GO:0005515
Rops6g00453 794 SMART WD40_4 548 587 IPR001680 GO:0005515
Rops6g00453 794 SMART WD40_4 634 670 IPR001680 GO:0005515
Rops6g00453 794 SMART WD40_4 591 631 IPR001680 GO:0005515
Rops6g00453 794 SMART WD40_4 755 794 IPR001680 GO:0005515
Rops6g00453 794 SMART WD40_4 673 711 IPR001680 GO:0005515
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 513 548 - -
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 762 794 IPR001680 GO:0005515
Rops6g00453 794 Pfam LisH 19 45 IPR006594 GO:0005515
Rops6g00453 794 MobiDBLite consensus disorder prediction 329 422 - -
Rops6g00453 794 Pfam WD domain, G-beta repeat 597 631 IPR001680 GO:0005515
Rops6g00453 794 Pfam WD domain, G-beta repeat 676 711 IPR001680 GO:0005515
Rops6g00453 794 Pfam WD domain, G-beta repeat 518 545 IPR001680 GO:0005515
Rops6g00453 794 Pfam WD domain, G-beta repeat 553 587 IPR001680 GO:0005515
Rops6g00453 794 Pfam WD domain, G-beta repeat 761 794 IPR001680 GO:0005515
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 555 587 IPR001680 GO:0005515
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 762 794 - -
Rops6g00453 794 ProSitePatterns Trp-Asp (WD) repeats signature. 532 546 IPR019775 -
Rops6g00453 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 640 IPR001680 GO:0005515
Rops6g00453 794 SMART Lish 17 49 IPR006594 GO:0005515
Rops6g00453 794 MobiDBLite consensus disorder prediction 332 416 - -
Rops6g00453 794 PRINTS G protein beta WD-40 repeat signature 781 794 IPR020472 -
Rops6g00453 794 PRINTS G protein beta WD-40 repeat signature 532 546 IPR020472 -
Rops6g00453 794 PRINTS G protein beta WD-40 repeat signature 574 588 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00453 Rops-Chr6 12298707 12323342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00453 592 793 Miscellaneous Gene Families AT5G08390 23.671 4.58e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Rops6g00453 WD40 0.012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00453 - - gmx:100797756 1424.84