Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00450 ATGGCGAAGGGTGACGATGTTGCGATGAGAAAGAAGAACAAGAAGCTTAGAAAGAAGAATGACTCTTCTTCTGTCTCTACTAAGGTTGCCGCCATGATCGCCGCCAAGAAGCGCCGTAAGGCTGGTAAACGCCGCATTTGCCAGGGGATGTGCTTTAGTCTACCTACTCCAGAAGATCCATTCAATGATAGACACGGGAAAGAAGAATTCAACAAAAGGGATCCTAAAAAGAAGAGACATACCTCAGAAGATAAGACTGTTCCTCTTAATGGGAAGAATGTCCCAGGAAAGAATGGCACTGTTGGTGGGAAAATTTCCCAGGAATTGAATCAACAAACAGGAAATGAGCCTGTCACTGCCAACAACAATCTGGGCCAGAAATGTATTATTAACTCAGAAAGGAAAAATATTGAGGTGATTCAGATGGCTGACCTTTGCGGTGCCCAACAGCATGATAGTGAAATTTCAGAGTTCCCTTCTAAATTTGTTTTTTGGTGTTTAAGTGCAATTGAAAGTGCACTGCGACATGGTGATGCCTACACCGATGGAGAGGGCAACTCTTTCTTCACTAATTCATGGGGATTAGAATTTTCTAAGTGTTATTCTACTGGGAAAGATCTGATGGAGACCAGTGGAACATCTGCTACTACTGAGCAAATTGCATGGATAGTTTCTGGGGCAGCTGATACTTTTGTGAGAAAAGAGAAACAAGGCTTATCATTCGCCTCTCCCTTTCTTTTGTTTCTCGTATCTTCCCAAGAAAAAGCTGCCCAGGTTCGAACAGTTTGCAAGCCTTTGAAATCTCTTGGAATACATACAGTGAGTATTCATCCAGGTGCTTCCTTAGATCATCAGATTCAAGGTTTGAAAAGTTGTGAGCCTGAGTTTCTCGTTTCTACCCCTGAGAGGCTTTTGGAGCTTGTTTCTATGAAGGCCATTGATATATCTGGTGTCTCCATGCTGGTCATTGATGGGCTTAGTCCTATTTGTAGTGCTGGCCACACTGATACAATAAAATCCATCAAGAAGTTTATTTCTGGCGATCCCCGTCTTGTGGTTTTCAATGATAGCTCCAACCATACGTCTATCCCAATGGTTCGGTATCTGCTGACAGGATCTATTTGTAGACTATCTCTCAATAATTCCATCACCAGCCTAAGTTCAGGCATTATCCAGTCTGTTAAAGTGTGTACATCAGAAGAAGATAAACTTGTTAAGAGCATTGAAGTCCTGGATCAATTTCGGAGCAGCCACACTCATAATTCAAACCTGCTATATATTTTGAGGACAGATGTCAAGTGCCATAAATTGGTCAAGACTCTCAAATCCAAGGGTTGTTGTTCCATTTCACTTGATTCTGATGCTGCAAGTTTTAATGATAGTATGGATTTAAACAGCAGATCACAACCAGCGGTTTCCATGATTGATTTGGAGCATGTCTTCACTACAGATATAGGAATGTATGATGTAATAGTCCTACCTAGTTTTGTACCCTCTATGGACACTTATGTGCATATTTTGACAAAGATGGCCCGCCAAAGTGTCAATGGTGTTTTGCATAGTTTCTTAACAAAAGGAGATGGAGAACTTGCTGGACCCCTCAGCACAATTCTTGAACAATGTGGGCAGGAAGTGCCTCAGACCCTGCAAGATCTGCATCATACATCATCAAACATGTTGGAAGATTGA 1689 0.4186 MAKGDDVAMRKKNKKLRKKNDSSSVSTKVAAMIAAKKRRKAGKRRICQGMCFSLPTPEDPFNDRHGKEEFNKRDPKKKRHTSEDKTVPLNGKNVPGKNGTVGGKISQELNQQTGNEPVTANNNLGQKCIINSERKNIEVIQMADLCGAQQHDSEISEFPSKFVFWCLSAIESALRHGDAYTDGEGNSFFTNSWGLEFSKCYSTGKDLMETSGTSATTEQIAWIVSGAADTFVRKEKQGLSFASPFLLFLVSSQEKAAQVRTVCKPLKSLGIHTVSIHPGASLDHQIQGLKSCEPEFLVSTPERLLELVSMKAIDISGVSMLVIDGLSPICSAGHTDTIKSIKKFISGDPRLVVFNDSSNHTSIPMVRYLLTGSICRLSLNNSITSLSSGIIQSVKVCTSEEDKLVKSIEVLDQFRSSHTHNSNLLYILRTDVKCHKLVKTLKSKGCCSISLDSDAASFNDSMDLNSRSQPAVSMIDLEHVFTTDIGMYDVIVLPSFVPSMDTYVHILTKMARQSVNGVLHSFLTKGDGELAGPLSTILEQCGQEVPQTLQDLHHTSSNMLED* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00450 562 Gene3D - 235 379 IPR027417 -
Rops6g00450 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 355 IPR027417 -
Rops6g00450 562 Pfam DEAD/DEAH box helicase 238 345 IPR011545 GO:0003676|GO:0005524
Rops6g00450 562 MobiDBLite consensus disorder prediction 60 86 - -
Rops6g00450 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 528 IPR027417 -
Rops6g00450 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 12 537 - -
Rops6g00450 562 MobiDBLite consensus disorder prediction 1 104 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00450 247 552 Eukaryotic Initiation Factors Gene Family AT1G72730 21.630 3.01e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00450 - - gmx:100809099 830.476