Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00446 ATGTTGTTTGTGAAGATTCTTAAGGTGCAAGGTTTTGATTCTGAACAATTTGAAGAATTTCTAAAGGAGATCTCACTCATGAAGCGTCTACGTCATCCAAACATTGTACTTCTAATGGGTGCAGTTATTCAACCCCCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGCAGCTTGTATGAACTTCTGCATATGCCCAGTGTTGGATCATCACTCAGTGAGAGGCGTCATTTGAGTATGGCATATAATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTCTTGGTTGATGATTCATACATCGTTAAGACATTCCAAGGTCATGTGAATCCTCAAGTGGCTGCCTTGATTGAGCTCTGCTGGTCTGATGACCTCTGGAGACGGCCTTCTTTCTCCGATGTTATGAAATGTTTGCAAAAAATAATTGCTGATGCTGAAGGGTGA 489 0.3967 MLFVKILKVQGFDSEQFEEFLKEISLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHMPSVGSSLSERRHLSMAYNVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYIVKTFQGHVNPQVAALIELCWSDDLWRRPSFSDVMKCLQKIIADAEG* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00446 162 Gene3D Transferase(Phosphotransferase) domain 1 1 120 - -
Rops6g00446 162 SUPERFAMILY Protein kinase-like (PK-like) 4 157 IPR011009 -
Rops6g00446 162 Pfam Protein tyrosine and serine/threonine kinase 3 118 IPR001245 GO:0004672|GO:0006468
Rops6g00446 162 ProSiteProfiles Protein kinase domain profile. 1 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00446 162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Rops6g00446 162 SMART serkin_6 4 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00446 162 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00446 Rops-Chr6 12126813 12145513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00446 123 160 MAP Kinase Kinase Kinase AT5G03730 50.000 2.74e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Rops6g00446 PK_Tyr_Ser-Thr 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00446 K14510 - pvu:PHAVU_007G245400g 213.386