Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00417 ATGATGCTTGCGTTGAGAATAGTTTGGTTGTGTGCCTATACAACCTTGCTAAAGTGTGTCATTAACGTGGTTGTGTATCTCATATGTCAAGAGAATCTCAAAAGTGTGGTTATTCAAGTATCCCCCACCACCGCCAACACCAATGGTGACCGACAGTCATATTTAAATGGTGATGTTGGTTGCTCCAATCCTCCAACCAGTAGGCATAGTCGAGAATTGAATCTGAAGGGTCGAAGGTCGTGGACACTTGATTCCGCTGAACAAGATGCATTTTTGGCAAATGAAGCAACGAAAAAATGGACTTCAAGTAATCAGGTGCTGGTTGAAATAGCCTGCACTAGGTCCTCTGAACAGTTGTTTGATGTGAGCAAGGCTTATCATGCTCTTTATAAGAAGTCTCTTGAGGAGGATGTTGCTCATCATACAACAGGGGACTTCCGTAAGCTCCTACTACCTCTGGTTAGTTGTTATCGATATGAAGGAGATGAGGTCAACCGGACTCATAGACGCCATTACGGGGTCCACAAGCATGACCATATCCCTGACTCAGGCCTGCAAGTCACCATCGCTTTCAACCACTTCGGTGGGAAACTCGTCCAAAAGATCCCACGTTGCAGAAGAGGTTACATTCACGTGGTCAACAATGACTTCACTGAGTGGGAGATGTATGCCATTGGAGGGAATGGTGAACCCACCATTAATAGCCAGGGTGCACCCATTCCTCCTTGCATATCCCAGCTTGAAGGTGGACTTGTTCAAGTCGCGGTAGAAGTCGAGGATCATGCATAA 789 0.4601 MMLALRIVWLCAYTTLLKCVINVVVYLICQENLKSVVIQVSPTTANTNGDRQSYLNGDVGCSNPPTSRHSRELNLKGRRSWTLDSAEQDAFLANEATKKWTSSNQVLVEIACTRSSEQLFDVSKAYHALYKKSLEEDVAHHTTGDFRKLLLPLVSCYRYEGDEVNRTHRRHYGVHKHDHIPDSGLQVTIAFNHFGGKLVQKIPRCRRGYIHVVNNDFTEWEMYAIGGNGEPTINSQGAPIPPCISQLEGGLVQVAVEVEDHA* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00417 262 SUPERFAMILY Pectin lyase-like 168 237 IPR011050 -
Rops6g00417 262 Gene3D - 156 247 IPR012334 -
Rops6g00417 262 PANTHER PECTATE LYASE 18-RELATED 175 237 IPR045032 GO:0030570
Rops6g00417 262 FunFam Annexin 84 154 - -
Rops6g00417 262 Pfam Annexin 88 153 IPR018502 GO:0005509|GO:0005544
Rops6g00417 262 PRINTS Pollen allergen Amb family signature 223 242 IPR018082 -
Rops6g00417 262 PRINTS Pollen allergen Amb family signature 201 220 IPR018082 -
Rops6g00417 262 SMART annex3 101 153 IPR018502 GO:0005509|GO:0005544
Rops6g00417 262 Gene3D Annexin 84 154 IPR037104 GO:0005509|GO:0005544
Rops6g00417 262 SMART amb_all 66 242 IPR002022 -
Rops6g00417 262 ProSiteProfiles Annexin repeat profile. 84 155 IPR018502 GO:0005509|GO:0005544
Rops6g00417 262 SUPERFAMILY Annexin 80 167 IPR037104 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00417 Rops-Chr6 10989450 10990471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00417 175 242 Polysaccharide Lyase AT3G53190 73.611 7.93e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00417 K17098 - gmx:100784252 162.925