Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00412 ATGCCTTCCACAACAACCGTTTTTTTTCGCAACTCTTTAAGCATGAAAGCACTCAAGTTGGCATCCGGGTCGAAAATCCTTGCTGGGGGCTATGCTTCCTCGAGCATGGCACGTAGCCCGATGACAGGATGGCCATTGTCTCTTCATTTGGGGTTGTGGCACACGTTGCTTTCAACACCTCCAGTGAAACCGGCTCAAGTGAGCACGTCTCATGCTGTCTTCGTGGAGCTGGTCCTCTTGAAAATCATGCATGCAATAGGAGGTGCTGGTAGCTTTGGCAGTGTTTACAAAGGGAAGTTACCAGATGGTCGTGAAGTGGCCATTAAAAGAGGAGATACCAGCACTAAGAAGAAGAAATTCCAAGAGAAAGAAATTGCTTTTGATTCTGAATTGGCATTGTTGTCAAGGCTTCACCACAAGCATTTGGTGAGGCTAATTGGGTTTAGGGTGGAGAATGATGAGAAGGTTTTGGTTTATGAGTACATGAGCAATGGATCACTCCATGATCATTTGTATGACAAGAATAATATTGACAAAAGTAGCAGCATTTTGAATTCTTGGAAGATGAGAATCAAAATTGCATTAGATGCTGCTAGGGGAATTGAGTACATTCAGAACTGTGCAGTGCCACCCATTATTCACAGAGATATCAAGTCCTCAAATATACTTTTAGAATCAGATTTGAATGCTAGAGTTTCTGATGCAATGTCATCTCCTATACACACACAGACCTGA 735 0.4299 MPSTTTVFFRNSLSMKALKLASGSKILAGGYASSSMARSPMTGWPLSLHLGLWHTLLSTPPVKPAQVSTSHAVFVELVLLKIMHAIGGAGSFGSVYKGKLPDGREVAIKRGDTSTKKKKFQEKEIAFDSELALLSRLHHKHLVRLIGFRVENDEKVLVYEYMSNGSLHDHLYDKNNIDKSSSILNSWKMRIKIALDAARGIEYIQNCAVPPIIHRDIKSSNILLESDLNARVSDAMSSPIHTQT* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00412 244 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 85 238 IPR044815 GO:0004674
Rops6g00412 244 Pfam Protein kinase domain 88 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00412 244 SMART serkin_6 81 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00412 244 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Rops6g00412 244 ProSiteProfiles Protein kinase domain profile. 81 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00412 244 SUPERFAMILY Protein kinase-like (PK-like) 88 234 IPR011009 -
Rops6g00412 244 Gene3D Transferase(Phosphotransferase) domain 1 163 243 - -
Rops6g00412 244 Gene3D Phosphorylase Kinase; domain 1 88 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00412 Rops-Chr6 10762357 10772628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00412 88 234 Receptor kinase-like Gene Family AT3G55950 75.510 4.66e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Rops6g00412 Pkinase 5.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00412 - - gmx:100776682 256.529