Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00396 ATGGCAGGGCGATCGTCATTCTGCTCTTCTTCCTTTATCTCTGGATGGGAATATGATGTGTTTCTCAGCTTCAGCGGAAAGGATACTCGACACGGTTTTATTGGCTATCTCTACAAAGCACTCCGTGACAGGGGAATCCACACCTTCATTGATGACGTGGACCTTCAAAGAGGGGAGCAAATCACACCATCACTTATCAAGGCAATTCAAGAGTCCAGAATTGCCATCCCCGTGTTCTCCAAGAACTATGCTTCTTCCTCTTTTTGCTTAGATGAACTTGTCAACATCCTTGCCTGCTTCAAGGAAAAGGGTCAAACGGTTTTGCCAGTATTTTATGACGTGGATCCTTTTGAGGTGCGACATCAGAGAGGTTGTTATAAAGAAGCATTGGCTAGTCATGAGAAGAGGTTCAAGGATGACAAGGAGAAGGTGCAAAAATGGAGGATTGCTCTACGTCAAGCAGCTGATTTGTCTGGCTTTCATTTCAAACATGGGAATGAGAATGAATACAATTTTATTGGAAAGATTGTCAAAGAGGGAAGTAGTAAAATTCAAATCATAATTCTGGATTTCCTCAGTTGTGAAGAAGTAGTAGAATGGGATGGAAAGGCCTTCAAGAAGATGAAAAACCTCAAGACTCTTATTATTAGAAAAGGTTGTTTTTCCAAAGGTCCCAATCATCTTCCGAATGGTTTAAGAGTACTGGAATGGTGGAGATATCCATCACCATCTTTACCATCTGATTTTCATCCAAGGAAACTTGAGATACTAGAGTTTCCCCAAGGTTGCTTAGAGTCACTTGAGTTGTTCAGGTCAAAGAAGAAGTTCGTGAATATGAGGGTTTTGAATTTTGATGATTGTGAGTATATAAAAGAGATACCTGATGTGTCTGGTGCTCCAAATTTAGAAGAAATATCATTTGGATATTGTGAGAATTTAATTAAAATTCACAAATCGGTTGGATTACTAGATAAACTTAAAATCTTGAATGCTGATGGTTGCAGCATGCTTAACAGTTTTCCACCCATCAAGTTGATCTCTCTTGAAAAACTCAAGCTTTCATATTGTCCTCATCTTAAGAATTTTCCAGAAATATTAGGAAAGATGGAAAATATAACAGTGCTTGATATCTTGAACACTAGCATAAAAGAACTGCCATTTTCAATTCACAATCTCACTCGGCTTCAAAGACTAGTAATGATAGGCCGTGGAGTAGTTCAGTTGCCAAGCAGCATTTTCGCGATGCAAGAGCTAAACAAGTTCGTTGCTGGGGCATGTAGATTGCTGTTACCTAAACAGGAAGAAGGTGAAGCACAAGTGAGCTCAATGGTCTTTGAAAACACCATTAATCTTGGTCTTTCAGGCTGCAATATATCAGATGAATTCCTTCAAATTGGTCTCCCTTTGTTTGGCAAAGTGAAAGAGTTATACCTATCACACAATGACTTCAAAATTCTTCCTGCATGCGTCAAAGAATGTAACTTCTTGTCAAAAATTCATGTAGATGGTTGCAAGAGACTTCGAAAGATTGAAGGGATTCCGCCCAACTTAGAAACATTCTCTGCAATATGTTGCACATCATTGAAAGATTTAGACCTTACACTTCTTCCAGCATGCACCAAAGAATGTCACTTTTTGAGGACACTTATTTTGGATAACTGCACGGATCTTAAACGAATTAGAGGGATTCCGCCCAACATAAGAACTTTGTCTGCAAGAGACTGCCGATCCTTGAATTATGGCTGTAGAAGCATGTTGCTGAATAAGAAAATGCACATGGAGGGTGGAGACAAAGAGTTTCATTTGCCAGGAACAAGGATTCCAGAGTGGTTTGAGCACAGCACCGAAGGACCATCAATTTCTTTCTGTTTCCGTAACGAGCTCCCTGCGATATCTGTGTGTATTGTTATTGGAGCCAGCACATATGAAGACCTTGTTCAGCCAGAATTTATCATCAATGGCAATAAAGATTTATCAGAGTTACATGACAATAAGCAAAGCGGGGTAGCAGATCATATGATTATTTTTGATAAAAGACAGGTAACTCTCAAATCGAAAAGGGAATGGAATCATGTGGTGTGTACTATATCTGGCCACCCAAACAAGTTGTTTATCAAAAAAATTGGAATCCGTTTATTCAGACAATGTAGTAGCATGGAGAACATCCGATTCGAGCATACATTGGTGAACATGGGAGATTATCAGAGACAATTCTGGCAGATGTTAAAAATGAAAGCCGAAATATGGGAACAGCTTCTGACACTGCTTATTTTATTGCTTTTCTTTTCTTTTCTTTCTTTCTATTTTGAGAAATTCTTAGGTGCTCCGTACCATTTATTTTGTGACACCTAA 2352 0.3903 MAGRSSFCSSSFISGWEYDVFLSFSGKDTRHGFIGYLYKALRDRGIHTFIDDVDLQRGEQITPSLIKAIQESRIAIPVFSKNYASSSFCLDELVNILACFKEKGQTVLPVFYDVDPFEVRHQRGCYKEALASHEKRFKDDKEKVQKWRIALRQAADLSGFHFKHGNENEYNFIGKIVKEGSSKIQIIILDFLSCEEVVEWDGKAFKKMKNLKTLIIRKGCFSKGPNHLPNGLRVLEWWRYPSPSLPSDFHPRKLEILEFPQGCLESLELFRSKKKFVNMRVLNFDDCEYIKEIPDVSGAPNLEEISFGYCENLIKIHKSVGLLDKLKILNADGCSMLNSFPPIKLISLEKLKLSYCPHLKNFPEILGKMENITVLDILNTSIKELPFSIHNLTRLQRLVMIGRGVVQLPSSIFAMQELNKFVAGACRLLLPKQEEGEAQVSSMVFENTINLGLSGCNISDEFLQIGLPLFGKVKELYLSHNDFKILPACVKECNFLSKIHVDGCKRLRKIEGIPPNLETFSAICCTSLKDLDLTLLPACTKECHFLRTLILDNCTDLKRIRGIPPNIRTLSARDCRSLNYGCRSMLLNKKMHMEGGDKEFHLPGTRIPEWFEHSTEGPSISFCFRNELPAISVCIVIGASTYEDLVQPEFIINGNKDLSELHDNKQSGVADHMIIFDKRQVTLKSKREWNHVVCTISGHPNKLFIKKIGIRLFRQCSSMENIRFEHTLVNMGDYQRQFWQMLKMKAEIWEQLLTLLILLLFFSFLSFYFEKFLGAPYHLFCDT* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00396 783 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 189 521 IPR044974 GO:0006952
Rops6g00396 783 Gene3D Ribonuclease Inhibitor 361 580 IPR032675 -
Rops6g00396 783 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Rops6g00396 783 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Rops6g00396 783 Pfam TIR domain 18 179 IPR000157 GO:0007165
Rops6g00396 783 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Rops6g00396 783 SMART till_3 17 157 IPR000157 GO:0007165
Rops6g00396 783 Gene3D Ribonuclease Inhibitor 253 360 IPR032675 -
Rops6g00396 783 SUPERFAMILY L domain-like 191 559 - -
Rops6g00396 783 Gene3D - 13 190 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00396 Rops-Chr6 10531695 10535672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00396 149 426 WRKY Transcription Factor Family AT4G12020 33.779 2.38e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00396 - - gmx:100804616 575.474