Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00393 ATGGAGGTTCTAGAAGAAAAAGAAGAAGACCAACTTGATTGGGAAAATTTCTTCGACCAATTTCCAGAATTCGAAGTCAATGATTTTTTGCAGGAAGAGGAGTCTCTTCCTGTTGCTTCCACCGATGGTCACTCTCCAAATCCCGTTCTATCGGAGATCGAGAACTTGCTTATGTCTGACGCCGGCGAGGGCGACGGCAACGTCGTTACCGGAACGCCATCGTCGGAGTCCGATTACGACAAGCTTATGGCGGAGATTCTCGTGGAGCCGCGCCCTGAATCCGAAGACGGTTCGGTTCCTTCCGATAAAGACAGAGTCGATCCAGCAACTCCTGAAGAGGCTGCCCATGAATCCATGTCCAAGAAGCAAACGAGGCAGATGAGGAACAGGGATGCTGCTGTGAGATCAAGAGAGAGGAAGAAGATATATGTGAAAGACCTTGAGATGAAGAGTAGGTATTATGAAGGGGAATGCAGAAGACTGTGGCATTTGCTCCAGTGCTGCTATGCTGAGAACCATGCTTTGCGGCTTTGCTTGCAATCACGTGGTGGTGCATTTGGTGCTTCCATGACCACGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGCTGGGTTCCCTGCTGTGGTTCACGGGCATCGCGTGCCAACTCAGTCTACCCCTAGTACTGTGGTTAACAGCAGTACTTCCAAGAGAAAACATGGAACAGAAAAACCTAAGAGGAGTGGCTCGAAAAGGGCCAGAAAGTAAGATCTCTGAGTATTTCCCGATACAATCGTTTGTAAAGAGTAGAAGATGCCGAGCTTCAAGAACAAAGATGAAATTTGATTTTCTCCTTTTTCTATAA 849 0.4806 MEVLEEKEEDQLDWENFFDQFPEFEVNDFLQEEESLPVASTDGHSPNPVLSEIENLLMSDAGEGDGNVVTGTPSSESDYDKLMAEILVEPRPESEDGSVPSDKDRVDPATPEEAAHESMSKKQTRQMRNRDAAVRSRERKKIYVKDLEMKSRYYEGECRRLWHLLQCCYAENHALRLCLQSRGGAFGASMTTQESAVLLLESLLLGSLLWFTGIACQLSLPLVLWLTAVLPRENMEQKNLRGVARKGPESKISEYFPIQSFVKSRRCRASRTKMKFDFLLFL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00393 282 SUPERFAMILY Leucine zipper domain 121 177 IPR046347 GO:0003700|GO:0006355
Rops6g00393 282 Gene3D - 120 180 - -
Rops6g00393 282 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 119 161 IPR004827 GO:0003700|GO:0006355
Rops6g00393 282 CDD bZIP_HY5-like 122 173 - -
Rops6g00393 282 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 5 251 - -
Rops6g00393 282 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 125 139 IPR004827 GO:0003700|GO:0006355
Rops6g00393 282 Pfam bZIP transcription factor 120 159 IPR004827 GO:0003700|GO:0006355
Rops6g00393 282 MobiDBLite consensus disorder prediction 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00393 Rops-Chr6 10474524 10477138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00393 34 279 bZIP Transcription Factor Family AT1G42990 39.568 1.81e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops6g00393 bZIP_1 3.3e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00393 - - gmx:778132 328.176