Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00384 ATGGAGGATCAGGAAATTTTGGGTGGTGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAGGAGGAAGTATGGAAGGAAATTCGGGAGGAAGAATCGAAGGACGACCTTGATGAATTTTCGGTGAAGTTGTTTTTCAAGGGCTTGTCAGTGGCTGAGGTTGAAAATTCTGGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGAGCATCTAGTCTTCCTGTTATTAGGGTGCAGAAAAGACTTGATTTTTATGCAGAGGAGCCACTAATTGACTACTTGGCTTTCATGGATGGTTTGCTGGAAGCTGCACAGAACAAGATCCACAGGGTTTATGCTTTTACAGATTCCGAGTTGTTGTACCATCAGATAACATGTGATGAAAATCTTGAGATGCCACTTTTGATTGCATTGAGAGAAAGGATTCTGGAACATGCCAATAATTTTGAAGCTTTTACTCTGAATCTTGTTCCAAGTATTGATCTTGAGAAGCCCCTGCAATTAGCCAAAGTAGCAATTGGACTAGTCACTTTTCCTGTAAATGGCAAGAGTTTACTTGAGAGATGTTCTATTTGTTGTGAAGACAAGCCGTTGCCAATTATGATCACCATGAAATGTCTACACAAGTTCTGTTCACATTGCTTGAGGGCCTGTGTTGATGGAAAAGTACAATCTTGTCAAGTCCTTGTAAGATGTCCTGAACCAGGATGCAAATATTACATCTCTGTCATTGAGTGCAGGTCTTTCCTACCATTCACTTCCTTTGAGTCTTTGGAGAAAGTCCTTGCAGAAGCAAATTTCCTCCATTCAGATAGAATTTACTGTCCATTTCCAAATTGTTCTGTTCTCCTTGCTCTCCAAAAATGGTTATCAGCCAGGGCTAGTTCATCTACACAAGGAATAATGAGAAATGGTGAGGGAGACAAAGAAATGGAAATGAATTCAGTGGTAGTTGAAAAAGTGGGAGGCAGATCATCTGTGACCAGCTGCTTATCAAGATATCCCCTGAAGTTCATTACACCCAAAAAGGTGGGTTCTTCCAAAATTGATGCTGTCTGGGTTTATGCCCTCAATTATGGAGGTGGAATTGTATCTGGTGATGACATTTCATGCAAGTTTTCTGTGGGAGATGCTTGCACCATGGTGTTAACTACCCAGGGTTCCACTAAGGTCTATAAATCTGTGGGATCTAAGTGTTCTCAACAGATATTAGAGGCTAGAGTTGGAAGCAATGCACTTTTAGCCATCATTCCAGATCCAGTAACATGTTTTTCCACTGCAAGATACTTTCAGAAGCAAGTCTTTAGTGTTTCTTCAGACTCCAATTTGGTCATTGTTGATTGGATTACTAGCGGGCGCCATGAAAGTGGAGAAAAATGGGATTTTGATCTATATAGAAGCACCAATAACATATTCCTAGAAGATGGTCAACCTTTATTTCTGGATACGATGTTATTGGAAAAAGAAAAAATTGGCTGCATACAGGAACACATGCAGGACTACCAAGTAATTGCAATGATTGTACTCCTAGGGCCAAAGATGCAGTATATCCAGAATCTAGTGCAAGATCATGTGAAAAGAATTATGTCTGAGCAATTACAGAATCCTTCCGCTTTCTTGAGGCACCAAAAAGACAAGGCTGATCGTTTCATGACAAAGCCAAACTTCATGGCTTCTTGCAGTGTCTTTGGTCCCAAGAGAATTGGTCTCCTTGTTCGAGTGGCTTCTGTGACAACTGAATCAGTTTACAAGTTTCTACAACATCAATTGGCTCCCTTGGAGTCAATGATTGGGCTAAATTCCAAACAGACATTATCAAAGAGAGTGAAAAATCATGAAGTGACATCAAGAAGCATAAATGGATTAGAATTGTCAGAACCCCTAGTGACATTTGCTCTCTCTTGTGGAACTTGGTCCTCTCCTGCTGTGAGAGTTTACACGGCATCCCAGGTTGAGAACGAATTGGAAGTGGCCAAAAGAGAGTACTTACAGGCTGCAGTTGGAATCTCAACATCAAAGTTTGTTATCCCGAAGTTGCTGGATTGGTGTTTACTAGACTTTGCAAAAGACTTGGAATCATTACTGGACTGGATATGCCTCCAATTACCGAGTGAACTGGGGAAAGAAGCCATTAAGTTCCTGGAGAAAAGAAAAACCGAGCCCCTCTCACAGTACTCCTGCAATGACATCAAGAGGCTGTTTAAGAGGATGATTTTGAGACTATAG 2244 0.4104 MEDQEILGGVGREEEEDEFCSCCEDEEEVWKEIREEESKDDLDEFSVKLFFKGLSVAEVENSGSGFSGIGVFMERASSLPVIRVQKRLDFYAEEPLIDYLAFMDGLLEAAQNKIHRVYAFTDSELLYHQITCDENLEMPLLIALRERILEHANNFEAFTLNLVPSIDLEKPLQLAKVAIGLVTFPVNGKSLLERCSICCEDKPLPIMITMKCLHKFCSHCLRACVDGKVQSCQVLVRCPEPGCKYYISVIECRSFLPFTSFESLEKVLAEANFLHSDRIYCPFPNCSVLLALQKWLSARASSSTQGIMRNGEGDKEMEMNSVVVEKVGGRSSVTSCLSRYPLKFITPKKVGSSKIDAVWVYALNYGGGIVSGDDISCKFSVGDACTMVLTTQGSTKVYKSVGSKCSQQILEARVGSNALLAIIPDPVTCFSTARYFQKQVFSVSSDSNLVIVDWITSGRHESGEKWDFDLYRSTNNIFLEDGQPLFLDTMLLEKEKIGCIQEHMQDYQVIAMIVLLGPKMQYIQNLVQDHVKRIMSEQLQNPSAFLRHQKDKADRFMTKPNFMASCSVFGPKRIGLLVRVASVTTESVYKFLQHQLAPLESMIGLNSKQTLSKRVKNHEVTSRSINGLELSEPLVTFALSCGTWSSPAVRVYTASQVENELEVAKREYLQAAVGISTSKFVIPKLLDWCLLDFAKDLESLLDWICLQLPSELGKEAIKFLEKRKTEPLSQYSCNDIKRLFKRMILRL* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00384 747 Gene3D - 48 181 IPR036397 GO:0003676
Rops6g00384 747 Pfam Reverse transcriptase-like 65 164 IPR002156 GO:0003676|GO:0004523
Rops6g00384 747 FunFam RBR-type E3 ubiquitin transferase 47 182 - -
Rops6g00384 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 276 IPR013083 -
Rops6g00384 747 Pfam Protein of unknown function, DUF547 611 669 IPR006869 -
Rops6g00384 747 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Rops6g00384 747 SUPERFAMILY RING/U-box 194 271 - -
Rops6g00384 747 Hamap Urease accessory protein UreD [ureD]. 309 600 IPR002669 GO:0006807|GO:0016151
Rops6g00384 747 PANTHER UREASE ACCESSORY PROTEIN D 314 606 IPR002669 GO:0006807|GO:0016151
Rops6g00384 747 Pfam UreD urease accessory protein 360 589 IPR002669 GO:0006807|GO:0016151
Rops6g00384 747 ProSiteProfiles Zinc finger RING-type profile. 195 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00384 Rops-Chr6 10309442 10320125 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00384 46 291 C3H Transcription Factor Family AT2G19610 23.735 2.84e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00384 K03190 - gmx:100800094 528.865