Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00359 ATGGAGAGCGATAGAGAAAGTGGTAGTGCACCCTTTGGTGTTGACTTAGCATTGTCGACGACTACAACAGGGTCGCCAAGGACACTCGCAAACACGTTGTCTGCATTTTGCTCGGTTCCACTTTCAAAGGCACCGTTGATGTTACCAACAGCTACGTCGTGCCCTTTGAAGAAGATGACAAGGATCCTTCATTTGATTCTCGTGTGCTGCGTTCTTCACCGTCTTGTAATTCCATCGGAAACCTTCTTCTTCTCACTTCTCATAAGATTACTTGATATGGCATCAAGACACCGTGCTCACAGAGAATCCATGAGTGGCCGATGGGGGTACCCTGCTGACGGGCCTTATGCTCGTGGGCCTCCTCCGATGCCACGCCCACCTATTCATCCTCATCCGGCTCTTTTGGAAGAAGAACTTGAAGTGCAACATGCAGAAATGAGGAGGCTGGTGGCAGATAACAGGAGGCTGCTTGATGATCGGATGGCATTGCAGCGAGACCTTGTAGCTGCAAAGGAGGAGCTTCATCGCATGAATCTTGCCATTGGTGACATTCGTGCTGAGCATGAGCTGCATTCGAAAAAACCTTGCTGTGGCAGAATTCGTACTATGGTTCATCCACTAGATTTCCATACAAATTGTGGAAGGATTCGCTTTTACTGCTGGGACACTGCTGGCCAAGAAAAATTTGGTGGTCTTCGTGATGCTTACTATATTCATGGACAGTGTGCTATTATCATGTTTGATGTAACAGCTCAGTTGACTTACAAGAATGTTCCTACATGGCACCGAGATCTCTGTCGGGTGTGCGAGAACATACCCATTGTTCTATGTGGAAACAAAGTTGATGTCAAGAATAGACAGGCCAAAGTGAAGCAGGTTACGTTTCACAGGAAGAAGAATCTGCAGTATTATGAGATATATGCAAAGAGTAACTATAATTTCCAGAAACCTTTCTTATACCTTGCCAAGAAACTTGCAGGGGATCCTGGTCTTCACTTTGTGGAGATGCCTGCTCTTGCTTCCTCGGTTGTGGGGGCTCCAAGTTATATGTGCCCAGAGCTCCTTGCTAATATACCCTATGGCTCCAAGTCAGATATTTGGTCTTTGGGACGCTGTGTACATGAAATGGCTGCTCACAAGCCAGCTTGTAAGGCTCTTGATATGCAAACATTGATTAACAAAATAAACAAGGCTTTAGTGGCAGTCTCTCAACCATGTCTTCCTTGCATGTACATGCCATGCATGCACTACGTTGGCAGTGGTCCCGTAGGGCAGGAGTCCAAGTTATCTCATAGGCCCCTCAACCATGCGTGGTATGCAAGAGAGACAGTAGTGTGGGATACTGGGTCAGCTTCACCAGTCTTACTCATCTCACGGCCAAGGAGCAAGTCACGAAGTTCATTCCATGAGTGGCAGGAGCAGCCTCCAGTTATACAGAACAGTCGATGGGCTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAAGAGATTAGAAGCAAATGAGAGTACTTGGCCTGCTCGCACCATATCAAAGAGTAAGAAGAAAGGGATTGATTCATTAATTGAAAGTGAAGAACCTACGGTTCAGTTTAGTTTCAGGTTGAGAATCATTGAATAG 1620 0.463 MESDRESGSAPFGVDLALSTTTTGSPRTLANTLSAFCSVPLSKAPLMLPTATSCPLKKMTRILHLILVCCVLHRLVIPSETFFFSLLIRLLDMASRHRAHRESMSGRWGYPADGPYARGPPPMPRPPIHPHPALLEEELEVQHAEMRRLVADNRRLLDDRMALQRDLVAAKEELHRMNLAIGDIRAEHELHSKKPCCGRIRTMVHPLDFHTNCGRIRFYCWDTAGQEKFGGLRDAYYIHGQCAIIMFDVTAQLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQAKVKQVTFHRKKNLQYYEIYAKSNYNFQKPFLYLAKKLAGDPGLHFVEMPALASSVVGAPSYMCPELLANIPYGSKSDIWSLGRCVHEMAAHKPACKALDMQTLINKINKALVAVSQPCLPCMYMPCMHYVGSGPVGQESKLSHRPLNHAWYARETVVWDTGSASPVLLISRPRSKSRSSFHEWQEQPPVIQNSRWASLPPELLRDVIKRLEANESTWPARTISKSKKKGIDSLIESEEPTVQFSFRLRIIE* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00359 539 SUPERFAMILY Protein kinase-like (PK-like) 338 419 IPR011009 -
Rops6g00359 539 PANTHER RAN GTPASE 200 343 IPR002041 GO:0003924|GO:0005525|GO:0006913
Rops6g00359 539 NCBIfam small GTP-binding protein domain 215 316 IPR005225 GO:0005525
Rops6g00359 539 Gene3D Transferase(Phosphotransferase) domain 1 140 417 - -
Rops6g00359 539 Gene3D - 194 346 IPR027417 -
Rops6g00359 539 FunFam GTP-binding nuclear protein 186 352 - -
Rops6g00359 539 Pfam Protein kinase domain 340 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00359 539 Pfam Ras family 214 325 IPR001806 GO:0003924|GO:0005525
Rops6g00359 539 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 248 269 IPR002041 GO:0003924|GO:0005525|GO:0006913
Rops6g00359 539 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 322 344 IPR002041 GO:0003924|GO:0005525|GO:0006913
Rops6g00359 539 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 284 302 IPR002041 GO:0003924|GO:0005525|GO:0006913
Rops6g00359 539 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 228 246 IPR002041 GO:0003924|GO:0005525|GO:0006913
Rops6g00359 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 337 IPR027417 -
Rops6g00359 539 SMART rab_sub_5 179 328 - -
Rops6g00359 539 Coils Coil 146 180 - -
Rops6g00359 539 SMART ran_sub_2 181 369 - -
Rops6g00359 539 SMART rho_sub_3 209 324 IPR001806 GO:0003924|GO:0005525
Rops6g00359 539 CDD Ran 204 333 IPR002041 GO:0003924|GO:0005525|GO:0006913
Rops6g00359 539 ProSiteProfiles small GTPase Rab1 family profile. 140 383 - -
Rops6g00359 539 SMART ras_sub_4 208 328 - -
Rops6g00359 539 ProSiteProfiles small GTPase Ran family profile. 29 325 IPR002041 GO:0003924|GO:0005525|GO:0006913
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00359 Rops-Chr6 9720251 9731038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00359 457 533 TUB Transcription Factor Family AT1G76900 39.535 9.72e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops6g00359 Ras 2.5e-30 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00359 K07936 - ming:122072724 280.026