Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00343 ATGAACTCAAGGGATTTGAGGTTGTTGCTTCTTCATCTTGTTGTGGCTTTGTGCTTGTTGTTCCATGTGGTGCAGTGCCAGCAACAAATGAGTGACCTTGATAACCCAGCTGTTCTGTCACTTGTTACACAGCTTGTGTATTCTCAAATCTCCAACTTGACCTCTTTTCTCAGTCACGATATCAATGCACGTTCCAGTTTCTGCGTCAAAGATCCGGATGCTGATTGGGATAGAGCGTTTAATTTTTCTTCCAATTTGGACTTCGTGTCTTCTTGCATTCGGAAGACTGAAGGAGATATTACACAACGCTTGTGTACTGCAGCAGAAGTAAAGTTTTACTTAAATAGTTTATTTGAGAGATCTACAAGTGCCAACTATTTAAAGCCTAACAAGAATTGCAATTTAACCTCATGGGTCTCTGGTTGTGAGCCAGGATGGGCTTGTGGTGTTCGCTCAGGCCAGCAGGTTGACCTTAGAAATTCACAGGAGATACCTGCAAGAACTACAAACTGTCAAGCATGTTGTGAGGGTTTCTTCTGTCCTCATGGCATCACATGCATGATACCTTGCCCTCTAGGTTCCTATTGTCCACTTGCTACACTCAATAACACAACTGGTGTATGTGAACCATATCTTTATCAACTCCCTCCAATGCAACCAAACCATACCTGTGGAGGAGCAAATATTTGGGCTGATGTTGGTAGCAGTAGTGAGATGTTTTGTTCAGCAGGATCATATTGCTCTTCAATCACCAAAAAAATTCCTTGCAGTAGTGGGCATTACTGCAGGATGGGTTCTACATCCGAGACAAGATGCTTCAAGTTGAGTTCATGTAATTCAAACACTGTGACCCAAAATATGCATGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTCCTCATCATTTACAGCTGTTCTGACCAAGTTCTCACTATTAGGCAAAGGAGAATGGCAAAGTCCAGAGAAGCAGCAGCCAGAAGTGTAAGGAAGACTGCAAAAGCACGCCAAAGATGGAAAACTGCTAAAGATAATGCTAAGAAGGGTGCAAAAGGACTGCAAGCTCAACTATCACAAACATTTTCTCGTTCAAAAGATGTGGCTGACCCAGAAGAAGTTAAAATTTTGAGTCAACCTACTACAGAAACAGATATTGAATTGTTTTCGCATTCACATCCTATTACTTCAAGCATGGTTGCAAGTTCATCTGCAGTGCCAAAGGAAAAAGGAAAAGAACCCAGTGATCTGATGCAGATGATACATGAAATTGAAAATGATTCAGATATTAGTGACAACTTTCATGTTGAAATAGAAAATAGAGACAAAAATGTTACAGCAAAAGTGTACAATGAAAAACAACTGCATACACATAGCCAAATTTTTAAGTATGCATATGCTCAACTTGAGAAAGAGAAGGCTCAGCAACAAGAAAATGAGAACCTTACCTTCTCAGGAGTGATTAGTATGGCTACAAAAAGTGAACAAAGGAAAAGGCTTTTAATTGAAATTTCTTTCAAAGATTTAACTCTCACTTTGAAAGCACAAAATAAACATATATTGAGAAGTGTTACTGGGAAAATTAAACCTGGCCGTATCACTGCTGTCATGGGTCCGTCAGGTGCTGGCAAGACAACATTCCTTTCAGCAATAGCTGGAAAGCCATTTGGATGCAAGGTATCTGGTTCCATTTTTATAAATGGAAAGAATGAATCTATCCACTCCTATAAGAAAATTATTGGCTTTGTGCCACAAGATGATATAGTTCATGGAAACCTGACAGTGGAAGAGAATTTACGGTTCAGTGCACAGTGCAGGCTATCTGCTAACTTGTCAAAGCCAAACAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAGTCTGTGAGAAATTCTTTGGTTGGAACTGTAGAAAAGCGAGGGATCTCTGGTGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTCATGGAACCTTCTCTTTTGATCTTGGATGAACCCACATCTGGTTTGGATAGTGCATCATCTCTGCTCCTTCTTAGAGCACTAAGACGTGAAGCACTTGAAGGAGTGAACATTTGCATGGTGGTTCACCAACCAAGCTATGCCTTGTTTAAAATGTTTGATGACTTGATACTCCTGGCAAAAGGCGGTCTTACTGTATATCATGGACCAGTCAAGAAAGTTGAAGAATACTTTGCAGGCTTTGGGATAATTATACCCGAGCGCATTAATCCTCCAGATTACTTCATTGACATTTTGGAGGGCATAGCAGTACCTAGTGGAAGTTCAGGAGTCAGTTATAAAGAGCTGCCAGTTAGATGGATGATTCATAATGGATACCCTGTACCTCTTGATATGCGGCAGAATGCAGCACAAAGAAGCTTTGCTGGAGAATTATGGCAAGATGTGAGAAATGTTGCGGAACTAAAGGGGGAAAAAATTAGACTCAATTTTTTAAAATCCAAGGATTTATCTCACCGGAAAACTCCTGGTATCTTCAAACAATACAAGTACTTCCTTATACGGGTTGGGAAGCAGCGATTACGGGAATCTAAGATCCAAGCCATAGATTATTTAATACTATTACTTGCTGGAGCATGCTTAGGATCGCTTACTAAAGCAAGTGATCAGACCTTTGGTGCAGCTGGATACACCTATACGGTGATTGCTGTATCTCTTTTATGCAAAATAGCGGCCTTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGCCTCTGGCATGAGCAGCTTGGCTTATTTTCTCTCTAAAGACACAATTGATCATTTTAATACAGTGATCAAGCCTGTGGTGTACCTCTCTATGTTCTATTTCTTTACCTATCCAAGATCAACTTTTGCTGATAATTACATTGTACTGCTTTGTCTTGTATACTGTGTGACTGGGATAGCATATGCATTGGCCATATTCTTCCAACCTGGCGCAGCCCAGCTTTGGTCAGTACTTCTTCCAGTTGTTACAACACTCGTTGCAACACAACAAAAAGATAGTAAATTTTTGAAGGATATAGCTAATTTATGCTACTCTAAGTGGGCTTTAGAAGCATTCGTAATTGCAAATGCTGAAAGGTATCATGGAGTGTGGCTCATAACTCGTTGTGGTTCACTGCTGAAAAGTGGTTATAATCTTCATGATTGGAGTTTGTGCGTCTCCATCCTCATTCTTATGGGTGTAATCGCTCGGACACTAGCATTTTTTGGTATGCTTATCTTTCAAAAGAAGTAA 3273 0.4024 MNSRDLRLLLLHLVVALCLLFHVVQCQQQMSDLDNPAVLSLVTQLVYSQISNLTSFLSHDINARSSFCVKDPDADWDRAFNFSSNLDFVSSCIRKTEGDITQRLCTAAEVKFYLNSLFERSTSANYLKPNKNCNLTSWVSGCEPGWACGVRSGQQVDLRNSQEIPARTTNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNNTTGVCEPYLYQLPPMQPNHTCGGANIWADVGSSSEMFCSAGSYCSSITKKIPCSSGHYCRMGSTSETRCFKLSSCNSNTVTQNMHAYGIMLIAALSTLLLIIYSCSDQVLTIRQRRMAKSREAAARSVRKTAKARQRWKTAKDNAKKGAKGLQAQLSQTFSRSKDVADPEEVKILSQPTTETDIELFSHSHPITSSMVASSSAVPKEKGKEPSDLMQMIHEIENDSDISDNFHVEIENRDKNVTAKVYNEKQLHTHSQIFKYAYAQLEKEKAQQQENENLTFSGVISMATKSEQRKRLLIEISFKDLTLTLKAQNKHILRSVTGKIKPGRITAVMGPSGAGKTTFLSAIAGKPFGCKVSGSIFINGKNESIHSYKKIIGFVPQDDIVHGNLTVEENLRFSAQCRLSANLSKPNKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSLLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLAKGGLTVYHGPVKKVEEYFAGFGIIIPERINPPDYFIDILEGIAVPSGSSGVSYKELPVRWMIHNGYPVPLDMRQNAAQRSFAGELWQDVRNVAELKGEKIRLNFLKSKDLSHRKTPGIFKQYKYFLIRVGKQRLRESKIQAIDYLILLLAGACLGSLTKASDQTFGAAGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTIDHFNTVIKPVVYLSMFYFFTYPRSTFADNYIVLLCLVYCVTGIAYALAIFFQPGAAQLWSVLLPVVTTLVATQQKDSKFLKDIANLCYSKWALEAFVIANAERYHGVWLITRCGSLLKSGYNLHDWSLCVSILILMGVIARTLAFFGMLIFQKK* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00343 1090 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 245 1077 - -
Rops6g00343 1090 Pfam ABC-2 type transporter 703 1090 IPR043926 GO:0140359
Rops6g00343 1090 Pfam ABC transporter 522 674 IPR003439 GO:0005524
Rops6g00343 1090 CDD ABCG_EPDR 503 729 - -
Rops6g00343 1090 FunFam ABC transporter G family member 24 499 741 - -
Rops6g00343 1090 Gene3D - 503 739 IPR027417 -
Rops6g00343 1090 SMART AAA_5 531 723 IPR003593 GO:0016887
Rops6g00343 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 739 IPR027417 -
Rops6g00343 1090 MobiDBLite consensus disorder prediction 326 357 - -
Rops6g00343 1090 ProSitePatterns ABC transporters family signature. 646 660 IPR017871 GO:0005524|GO:0016887
Rops6g00343 1090 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 505 746 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00343 Rops-Chr6 9280265 9303916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00343 500 706 Calmodulin-binding Proteins AT2G36910 28.169 1.29e-14 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00343 - - gmx:100783798 1834.69