Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00331 ATGTCTCAGGTTCAGGTGCAGCCTCAAAATGCGATGCCCGGTGCCAACGGCGGTGCCGCTGCTCCTGCAGCGTCTGCGGCGGCTGACAGTGGAAACCTGTTCGTTCCGACGTCGCTTTATGTTGGAGATCTCGACCCAAATGTCACGGAATCGCAGCTTTATGACCTGTTCAACCAATTGGGTCAGGTTGTGTCTCTTAGGATTTGCAGGGACTTGACCAGTAGGAGGTCCCTCGGTTATGGTTATGTCAACTATAGCAACCGGCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAACAAGAAGCCCATCCGTATTATGTATTCGCGTCGTGATCCCATTATTCGTAAAAGTGGGGCAAGAAATATATTTATTAAGAATTTGGACAGGGCAATTGACCACAAGGCATTACATGATAGCTTCTCTGCATTTGGGAATATCCTTTCTTGCTCGGTAGCTACGGATTCATCTGGCCAATCAAAAGGCTATGGGTTTGTGCAATTCGATAATGAGGCCGCCGCTCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAATTATATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGTGAGTGCAATTGACAAGGCAAAATTCAAGAATGTTTTTGTAAAGAATCTATCAGAATCAACCACTGATGAAGAATTGAAGAGGATTTTTGGTGAATTTGGAACAATTACAAGTGCTGTAGTTATGAGGGATGGGGATGGAAAATCAAAGTGCTTTGGATTTGTGAACTTTGAGAATGCTGACGATGCTGCTAGGGCTGTTGAGGCTCTTAATGGGAAATTTTTTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAGGATATCTGAAACGGAGCAGGAATTGAAACTTAAATTTGAGCAGAGCATGAAAGAAGCTGCAGATAAGTATCAAGGGGCAAACTTGTACATCAAAAATTTAGATGATAGCATTGGTGATGATAAACTTAAGGAGTTGTTCTCCCCCTTTGGTACCATTACCTCATGCAAGGTTATGAGAGACTCCAATGGCATAAGTCGAAGATCGGGGTTTGTTGCATTCACAACTGCTGATGGGGCATCTAGAGCACTCCTGGAGATGAATGGCAAAATGGGGGCTCAATTTGCTCAAATGCGACCTGTGGCAATGCCACCATCTGTTGCTCCTCGTGTACCAATGTACCCCCCGGGTGGTCCTGGTATTGGTCAACAAATATTTTATGGTCAAGGCCCTCCTGCTATAATTCCTTCCCAGGATATAGATTAG 1302 0.447 MSQVQVQPQNAMPGANGGAAAPAASAAADSGNLFVPTSLYVGDLDPNVTESQLYDLFNQLGQVVSLRICRDLTSRRSLGYGYVNYSNRQDAARALDVLNFTPLNKKPIRIMYSRRDPIIRKSGARNIFIKNLDRAIDHKALHDSFSAFGNILSCSVATDSSGQSKGYGFVQFDNEAAAQKAIEKLNGMLLNDKQLYVGPFLRKQERVSAIDKAKFKNVFVKNLSESTTDEELKRIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKFFDDKEWYVGKAQRISETEQELKLKFEQSMKEAADKYQGANLYIKNLDDSIGDDKLKELFSPFGTITSCKVMRDSNGISRRSGFVAFTTADGASRALLEMNGKMGAQFAQMRPVAMPPSVAPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQDID* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00331 433 SUPERFAMILY RNA-binding domain, RBD 37 204 IPR035979 GO:0003676
Rops6g00331 433 Gene3D - 210 318 IPR012677 -
Rops6g00331 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Rops6g00331 433 FunFam Polyadenylate-binding protein 207 301 - -
Rops6g00331 433 FunFam Polyadenylate-binding protein 123 206 - -
Rops6g00331 433 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 38 383 IPR006515 GO:0003723
Rops6g00331 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723
Rops6g00331 433 FunFam Polyadenylate-binding protein 23 122 - -
Rops6g00331 433 SMART rrm1_1 217 289 IPR000504 GO:0003723
Rops6g00331 433 SMART rrm1_1 320 393 IPR000504 GO:0003723
Rops6g00331 433 SMART rrm1_1 126 198 IPR000504 GO:0003723
Rops6g00331 433 SMART rrm1_1 38 111 IPR000504 GO:0003723
Rops6g00331 433 CDD RRM1_I_PABPs 38 117 IPR034364 -
Rops6g00331 433 Gene3D - 319 393 IPR012677 -
Rops6g00331 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 400 IPR000504 GO:0003723
Rops6g00331 433 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g00331 433 Gene3D - 118 209 IPR012677 -
Rops6g00331 433 CDD RRM3_I_PABPs 215 293 - -
Rops6g00331 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 197 IPR000504 GO:0003723
Rops6g00331 433 SMART rrm2_1 38 111 IPR003954 GO:0003676
Rops6g00331 433 SMART rrm2_1 217 289 IPR003954 GO:0003676
Rops6g00331 433 SMART rrm2_1 126 198 IPR003954 GO:0003676
Rops6g00331 433 Gene3D - 1 117 IPR012677 -
Rops6g00331 433 PANTHER RNA BINDING PROTEIN 37 99 - -
Rops6g00331 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Rops6g00331 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 383 IPR000504 GO:0003723
Rops6g00331 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Rops6g00331 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 286 IPR000504 GO:0003723
Rops6g00331 433 SUPERFAMILY RNA-binding domain, RBD 216 383 IPR035979 GO:0003676
Rops6g00331 433 CDD RRM2_I_PABPs 123 199 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00331 Rops-Chr6 8912860 8917926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00331 1 430 Eukaryotic Initiation Factors Gene Family AT4G34110 66.075 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00331 K13126 - gmx:100813735 689.108