Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00314 ATGCAGCTTCATCAAGTGCTGCGAGGATTATTCCCGGAGCTTGCTCCAACTATTGGCATTGCGGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCGAATGTGCAGAGGTTGAAAACATACAAGGCCAAGTTGGTTATGTTCGCAAGACGGGCACACAAGGTCGAGGCTGGTGATTCTAGTCCCGAGGAAAGTGCAAATGCCACACAAGTTCAGGGTTCATATTTGCCCATTGTGTGGGAGAAGCCATCCGTTGAGCTTGTTAAGGTTACAGATGAAATGAAGGCATTTAAAGCATATTATAAGCTTCATCTTGAACACACCAACAAACGCCATTTTGGTTGCCATGCTAACCTCAGCATAGTTATTGTAGTTGAGAAGCTTGGCCTCTTCCAACCTAAGCTTTAA 417 0.4556 MQLHQVLRGLFPELAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVMFARRAHKVEAGDSSPEESANATQVQGSYLPIVWEKPSVELVKVTDEMKAFKAYYKLHLEHTNKRHFGCHANLSIVIVVEKLGLFQPKL* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00314 138 PANTHER 60S RIBOSOMAL PROTEIN L13 10 120 IPR001380 GO:0003735|GO:0005840|GO:0006412
Rops6g00314 138 Pfam Ribosomal protein L13e 9 109 IPR001380 GO:0003735|GO:0005840|GO:0006412
Rops6g00314 138 Gene3D - 92 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00314 Rops-Chr6 8435900 8436316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00314 9 117 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 76.147 1.60e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00314 K02873 - gmx:100499935 183.341