Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00296 ATGATTTCTTACTCCTTGGACAAATTGGCTGATCTGTTTGTCAAGGAGATTGTGCGGTTACATGGTGTGCCGCTTAGCATTGTGTCCAATAGAGATCCCAGATTCACATCTAGGTTCTGGAGATCCCTTCATCAGTCTTATGGGACCAGATTGAGTTTTAGTACAGCTTACCACCCTCAGTCTGATGGCCAGTCCGAAAGGACGATGCAAACTTTAGAGGATATGCTGAGGGTGTGTGTTTTGGAGAACAATGGTAGTTGGGATAGATACTTGCCTTTAGTGGAGTTTGCCTACAACAACAGTTATCATTCCAGTATTGGGATGGCACCGTATAAGGCACTCTATCGTAGGAAGTGTAGATCACCCTTATGTTGGTATGAGGTTGGTGAGAGGAAGCTATTAGGACCAGAGTTGGTACAGGAGACCACTGAGAAGATACGGGCCAATAGGGAAAATATGAAGATTGCTCAGAGTCGGCAGAAGAGTTATGCCGATAACAGGCGGAAGTTTGGTTTCAAGGTGAGGCCATGTTCGAAGGCTTACTCCCATGACTGGACCGAGAGTCCATTTGTTCATCAAGAAGGGAATGCAAGGAGAAGACACCTAAGGAGCCCATTGACTTTTGGTTCCTCCTCTTTGTCAATGCCTACTATTTTGGCACCACCCAAGTCTCCCATGGCAACATGCACGGTTAGTGATCACATGGAACAATCACATGTGGCCCTCGTATTGTTCAATAGTATCCTTGCTTCTAACAATCTCTCGAAAGTAGATGTCAGATTCAGGATATTTGGTCTTCTCAAGTGCATGAGCAATGGTACATTGAGTGGCAACTTAGCTACAAAGAGGCAACAATGTGTCCATATCTATAGTCTCCAACAATCTGACCTAGCTTGCCTTGCAACTTTGTGGCAAGATCATAGTCAACTCGGTGTAGCTTTGAAGTCTGAGGGAAGCACAATCGCTGCTATGGGTTCATTCAAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCACGTTGTTTACAATACGAAGCTAGTGAGAAACCAAATGCAAAGTCACTTGTGACTGCTCTAACCCCACTTCAGAAAGAAACTTCAGTACCGTCTTGTGTTTTAATGGGCATACCAGATGAGAGCCTATCATCAAAGGAAACAGTTTCATTAACCCCTTTTGGTGAAGCTTGTTCAAGAAGAGTAGAACCCAAGGACAACAAATGGAATTGTCACCACTTAATAGGGTCACAAAGCCGTGAAACTAGTCTCATAGGTCTCCAAGCTCACGTGCATGAAGCCATGCAGACCCTAAAGACAAGAAGTGGCTCTCCTGAAGTGCCTCAGAAGGTTTCTCCACGTGTTGTACGCCAACTCAACCATGCCCCTACAACTAGTATGACTTTAGAAGAGGTTGTGACAGCTGCAGCAGGAAGAATTCCTATTTTCTGGACGGTGAAGGACGTCGAGGGACACATGTTGGCTCTTGGAGCATGCAGTGTATTTATTGAAAGACCTGTGGTATTCTCTTTGGCTGCCGACGGAGAAGCTGGTGCTATATTAAGTGCTTGTGATGATAAGGTTGCTCACTGTGAGACTGCTCCTTTAACAGCAGCTGTTGTGCCTGGCCTTCGACTTCCCCAATTGCATCAAGTTCGGGACATGCTTGAGAAGGAGGAAGTTTTGCTCAGGAAGTTTGGTTTCAAGGTGAGGCCATGTTCAAAGGCTTACTCCCATGACTGGACCGAGAGTCCATTTGTTCATCAAGAGGGGAATGCAAGGAGAAGACACCTAAGGAGCCCATTGACTTTTGGTTCCTCCTCTTTGTCAATGCCTACTGTTTTGGCACCACCCAAGTCTCCCATGGCAACATGCACGGTTAGTGATCACATGGAACAATCACGTGTGAGCATGTTGAGACTTATGCATGGTGGAGAACTTGTCACGTTTGGGCAAGCCACTTAA 1974 0.4549 MISYSLDKLADLFVKEIVRLHGVPLSIVSNRDPRFTSRFWRSLHQSYGTRLSFSTAYHPQSDGQSERTMQTLEDMLRVCVLENNGSWDRYLPLVEFAYNNSYHSSIGMAPYKALYRRKCRSPLCWYEVGERKLLGPELVQETTEKIRANRENMKIAQSRQKSYADNRRKFGFKVRPCSKAYSHDWTESPFVHQEGNARRRHLRSPLTFGSSSLSMPTILAPPKSPMATCTVSDHMEQSHVALVLFNSILASNNLSKVDVRFRIFGLLKCMSNGTLSGNLATKRQQCVHIYSLQQSDLACLATLWQDHSQLGVALKSEGSTIAAMGSFKGHFSNDDGTELVRLASRCLQYEASEKPNAKSLVTALTPLQKETSVPSCVLMGIPDESLSSKETVSLTPFGEACSRRVEPKDNKWNCHHLIGSQSRETSLIGLQAHVHEAMQTLKTRSGSPEVPQKVSPRVVRQLNHAPTTSMTLEEVVTAAAGRIPIFWTVKDVEGHMLALGACSVFIERPVVFSLAADGEAGAILSACDDKVAHCETAPLTAAVVPGLRLPQLHQVRDMLEKEEVLLRKFGFKVRPCSKAYSHDWTESPFVHQEGNARRRHLRSPLTFGSSSLSMPTVLAPPKSPMATCTVSDHMEQSRVSMLRLMHGGELVTFGQAT* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00296 657 Pfam FMN-dependent dehydrogenase 460 522 IPR000262 GO:0016491
Rops6g00296 657 Coils Coil 139 159 - -
Rops6g00296 657 SUPERFAMILY Ribonuclease H-like 5 112 IPR012337 -
Rops6g00296 657 Gene3D - 3 166 IPR036397 GO:0003676
Rops6g00296 657 Gene3D Aldolase class I 453 526 IPR013785 -
Rops6g00296 657 ProSiteProfiles Integrase catalytic domain profile. 1 118 IPR001584 GO:0015074
Rops6g00296 657 PANTHER YALI0A06105P 3 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00296 Rops-Chr6 7679505 7693884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00296 566 602 C2H2 Transcription Factor Family AT5G12850 67.568 3.09e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00296 - - rcn:112170819 259.61