Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00272 ATGAACTTGTTTTACAAGGGTGATTTTAAGGACCAGAAGCTGATAAAAGAGGAGAGTTTTGACATGTCTATGTTGGATCTCAATGTTGACATTATCCATGCTGATGCTGACTCAACTTGTGCTCAAAAGGGGTTGCAACTGCAAAATTTTCCACCAGAAATGTCAGATTCCAAGACCTCAAACTCCTCTGTTTGGAATCCTGCACAGGAACATTCATCAAACAATTCTTCTCCCTTCATTTTTGTGGAGAAAGAAAGAGATGGCTCACAATTTTATCATACCACTGAAAGAGTCATCAAGGAAGAAAACATAGCACAAGAGCCAGAGATAGTGACAAGGACCCTTTTCCCTGTGACTGCTGATAGAGGAGGTAGAGTGTGTGATTCCAAGATGGGGTCTTGGGGGAAGACTCAATGGTTGAACTTGTCATTTCCTGAGCCTGATGGACAAAATGGATTGAGAACCTTGCAGCAGAAGCAACCTCAAGTTAGGAAAAATAGGAGAGGACCAAGGTCTCGTAGCTCACAGTACCGGGGTGTTACTTTTTACCGCAGGACTGGTAGATGGGAATCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGGTTTGACACTGCCCATGCTGCTGCAAGAGCATATGATAGAGCTGCTATTAAGTTTCGAGGAGTTGATGCTGATATAAACTTTAGTTTAAGTGATTATGAGGAGGATATGAAGCAGATGAGAGGATTGAGTAAGGAAGAATTTATCCTCATAGTTCGTAGACAAACCAATGGAATCTTGAGGAGAAGTTCAACATACAGAGGTGCATTAGCTCTTCACAAATATGATCAAGGAGAACCACGAATGGGACCATTTGTTGGCAAAACATTTAAGCCTTCTACCTATAAGGGAGAGATAATTGCAAATTCAAGCAGAGCAGGCACTTTCCATAATCTAGATTTGAGCCTTGGGATTTCACCATCTTCTAAGCAATTGAATAGTAGTGATTCTGGAGGTGGATCTTACCTTGGATATACGGATTGTAAGATACCCAATGAAAGAGCAAGAATGGATAAAGCCTTGGTAAACAGAATAAAAGATGTTCCTTTGCAAAGATATTCCAACTTGGCATGA 1122 0.4118 MNLFYKGDFKDQKLIKEESFDMSMLDLNVDIIHADADSTCAQKGLQLQNFPPEMSDSKTSNSSVWNPAQEHSSNNSSPFIFVEKERDGSQFYHTTERVIKEENIAQEPEIVTRTLFPVTADRGGRVCDSKMGSWGKTQWLNLSFPEPDGQNGLRTLQQKQPQVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFSLSDYEEDMKQMRGLSKEEFILIVRRQTNGILRRSSTYRGALALHKYDQGEPRMGPFVGKTFKPSTYKGEIIANSSRAGTFHNLDLSLGISPSSKQLNSSDSGGGSYLGYTDCKIPNERARMDKALVNRIKDVPLQRYSNLA* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00272 373 MobiDBLite consensus disorder prediction 49 75 - -
Rops6g00272 373 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 116 291 - -
Rops6g00272 373 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Rops6g00272 373 Gene3D AP2/ERF domain 175 234 IPR036955 GO:0003700|GO:0006355
Rops6g00272 373 ProSiteProfiles AP2/ERF domain profile. 176 232 IPR001471 GO:0003700|GO:0006355
Rops6g00272 373 SMART rav1_2 176 238 IPR001471 GO:0003700|GO:0006355
Rops6g00272 373 FunFam AP2-like ethylene-responsive transcription factor 175 234 - -
Rops6g00272 373 MobiDBLite consensus disorder prediction 157 177 - -
Rops6g00272 373 CDD AP2 175 231 IPR001471 GO:0003700|GO:0006355
Rops6g00272 373 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00272 Rops-Chr6 6525544 6529756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00272 24 291 AP2-EREBP Transcription Factor Family AT2G28550 50.709 3.93e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g00272 AP2 4.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00272 K09284 - gmx:100776138 514.998