Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00268 ATGAGGCATCACTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAGGACACTATTGTTATAAAATGTGGTCACACAATGCACTTTGAATGTTTCCAAGAGATGATAAAACGTGACAAGTACTGTTGTCCCATATGCTCCAAGTCGGTGACTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGGTTGAGGCAACTGTCATGCCTGAAGATTATCGGTACAAGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACCGAAGTTTACTTCCACATTCTTAGGCAAAAATGCGGTCACTGCAGATCATATAATGCACGTGCATGTGGTTTTCCTACGTGGGGAAGCTCATTCATGGACCAGTTTTGGAGCAAAGCCGTTAGGGTTGCATGA 402 0.4179 MRHHCPICYEYLFDSLKDTIVIKCGHTMHFECFQEMIKRDKYCCPICSKSVTDMSKTWKRIDEEVEATVMPEDYRYKKVWILCNDCNDTTEVYFHILRQKCGHCRSYNARACGFPTWGSSFMDQFWSKAVRVA* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00268 133 CDD RING-H2_Pirh2-like 4 48 - -
Rops6g00268 133 SUPERFAMILY RING/U-box 4 52 - -
Rops6g00268 133 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 111 - -
Rops6g00268 133 SMART ring_2 5 47 IPR001841 -
Rops6g00268 133 Pfam Zinc-ribbon 53 109 IPR039512 -
Rops6g00268 133 Gene3D - 78 114 - -
Rops6g00268 133 Pfam Ring finger domain 4 47 IPR001841 -
Rops6g00268 133 ProSiteProfiles Zinc finger RING-type profile. 5 48 IPR001841 -
Rops6g00268 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00268 Rops-Chr6 6412652 6413053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00268 1 110 C2H2 Transcription Factor Family AT3G18290 42.727 1.42e-22 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00268 K10144 - rcu:8262395 231.491