Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00263 ATGGAAGCTTCAAAATTAACTGGGAGAAAGCATGAAGAAGGGACTTGTCAGAAAAGGCCTCTTAGTTCTTCTGCTGAGAAATGGAAGGAAGTCTCTCTCAAACATAAAAAGGTGAAGCAAACATTACAAACATTTAGGGACTTGTTTTCCAAACTTTTGTGTCAATATAAAACAGACCAACTTGGACATTTGAAAGCAAAAACAAAAGCTCTGATGGAAGCAGCAATGTTGATGAAAAGGAAACATCAATGGGAGAACACTCAAAAACGAGTGGGACATGTGGAAGGAATTGAAGTTGGTGACGGGTTTCAATACAGGACTGAACTCAATGTTATTGGCCTCCACCATCAGTTTTCAAGTGGTATCGATTATATGGGGAAATATGAGAACTCTTTAGCCACAAGCATTGTTGTAACTGATCGCTATGCTAATTCTATGAAGTCTGACGGTTGCTTGGTTTACATAGGTCATGGAGGGAATCCTAATGTAAGAAGTGGTGTTTTGCCCCATGATCAGAAATTGGAGGGAGGAAATCTTGCTTTGAGAAATAGCATGATTGCTAGAAGTCCTGTGAGGGTGATATTGAAGGTTTGTAGAAAATCTGATGGGAGTAACAGTGATTATAACTGCTCATATATCTATGATGGATTGTATTCAGTGGACAACATGACCCAAGAAAGGGGACAATTTGGAAAACTCGTGTTCAAGTTTATAATGAATAGAATTTTAGACCAACCCATGTGTGTTTCCCCTAAGGATGTGGTCATGGAAGGGGGATTCGCAAGTTTTACTCAAAAGAAGAGACACAAATCCATAGGTCATGTAGCCAGAAAAGATGTTGTTCGTGTAAATGATGTTTCAGATGGCAAAGAAAAGTTTCCTATTCGGGTGGTGACACCAATAGATTGTGTTCCGATACCTCCATCTTTTGATTACCTATTCAATATGGTTTATCCTGAGAGGTTCAAGCAGCCAATTCTATATGGCTGTGATTGTTCAGATGCATGTGTTGATTGTTTAAAATGTGCTTGCATTATTAAGAATGGTGGAGCAATGCCATATGACTGTAATAAAAGACTTGCTTCCCCCATGAAATCATCTCTTATATATGAGTGTGGCCCTTCTTGCAAGTGCTCCTCATCATGCATCAACCGAGTTAGTCAGTGTGGTATTCAGTTCCAATTAGAAATATTCAAAACAGAATTGAAGGGTTGGGGTGTTAGAACTCGCACTTTCATTCCATCTGGAAGTTTTGTGTGTGAGTTCGTTGGGGAAGTCCATCGTAATAGAAAAGCTGGATCAAGGCTAGACGGGGATGACTATATATTTGAGATAGGTGCTGGCAAGGGCTTCATTGATGCAACAAGACGCGGAAACATTGGAAGATTTATAAATCATAGTTGTTCTCCTAATCTGTGTGTCAAAGATATCATGTATGATCACAATGATAAGAACCTTCCTCACAAAATGTTGTTTGCTGTAAAGGACATACCTGCTGGTAGAGAGCTAAGTTATGATTATAATTGCTGCCACAGAAAAGTTGTCAAGGTTAAGAGTAATAGTTGCCATTGTGGTTTACCGGAATGCAATGGACTGATTTACATTTGA 1608 0.3912 MEASKLTGRKHEEGTCQKRPLSSSAEKWKEVSLKHKKVKQTLQTFRDLFSKLLCQYKTDQLGHLKAKTKALMEAAMLMKRKHQWENTQKRVGHVEGIEVGDGFQYRTELNVIGLHHQFSSGIDYMGKYENSLATSIVVTDRYANSMKSDGCLVYIGHGGNPNVRSGVLPHDQKLEGGNLALRNSMIARSPVRVILKVCRKSDGSNSDYNCSYIYDGLYSVDNMTQERGQFGKLVFKFIMNRILDQPMCVSPKDVVMEGGFASFTQKKRHKSIGHVARKDVVRVNDVSDGKEKFPIRVVTPIDCVPIPPSFDYLFNMVYPERFKQPILYGCDCSDACVDCLKCACIIKNGGAMPYDCNKRLASPMKSSLIYECGPSCKCSSSCINRVSQCGIQFQLEIFKTELKGWGVRTRTFIPSGSFVCEFVGEVHRNRKAGSRLDGDDYIFEIGAGKGFIDATRRGNIGRFINHSCSPNLCVKDIMYDHNDKNLPHKMLFAVKDIPAGRELSYDYNCCHRKVVKVKSNSCHCGLPECNGLIYI* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00263 535 Pfam SET domain 404 508 IPR001214 GO:0005515
Rops6g00263 535 ProSiteProfiles Pre-SET domain profile. 328 390 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g00263 535 Gene3D - 73 259 IPR036987 -
Rops6g00263 535 ProSiteProfiles SET domain profile. 393 508 IPR001214 GO:0005515
Rops6g00263 535 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 19 526 - -
Rops6g00263 535 SMART G9a_1 87 245 IPR003105 -
Rops6g00263 535 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g00263 535 Pfam SAD/SRA domain 91 245 IPR003105 -
Rops6g00263 535 SUPERFAMILY PUA domain-like 74 247 IPR015947 -
Rops6g00263 535 SUPERFAMILY SET domain 274 516 IPR046341 -
Rops6g00263 535 ProSiteProfiles Post-SET domain profile. 518 534 IPR003616 -
Rops6g00263 535 Gene3D SET domain 275 534 IPR046341 -
Rops6g00263 535 ProSiteProfiles YDG domain profile. 92 241 IPR003105 -
Rops6g00263 535 Pfam Pre-SET motif 287 385 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g00263 535 SMART preset_2 283 377 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g00263 535 SMART set_7 393 514 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00263 Rops-Chr6 6246101 6247781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00263 48 531 Su(var)3-9 homologs AT1G73100 34.535 2.20e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g00263 SAD_SRA 3.9e-38 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00263 - - gmx:100807574 705.286