Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00261 ATGGCAGCTTCAAAATTAACTGGCAGAAAGCATGAAGAAGGGACTTGTCAGAAAAGGCCTTTTAGTTCTTCTGCTGAGAACTTGAAGGAAGTCTCTCTCAAACATAAAAAGGTGCAGCAAACATTACAAACATTCAGGGACTTGTCTTCCAAACTTTTGTGTCAATATGAAACAGACCAACTTGGACATTTGAAAGCAAAAACAAAAGCTCTGATGGAGGCAGCAATGTTGATGAAAAGGAAACATCAATGGGAGAACACTAAAAAACGAGTGGGACATGTGGAAGGAATTGAAGTTGGTGACGGGTTTCAATACAGGACTGAACTCAATGTTATTGGCCTCCACCATCAGTTTTCAAGTGGTATAGATTATATGGGGAAATATGAGAACTCTTTAGCCACAAGCATTGTTGTAACTGATCGCTATGCTAATGTTATAAAGTCTGGTGGTTGCTTGATTTACATAGGTCATGGAGGGAATCCTAATGTAAGAAGTGATGTTTTGCCCCATGATCAGAAATTGGAGGGAGGAAATCTTGCTTTGAGAAATAGCATGATTGCTAGAAGTCCTGTGAGGGTGATATTGAAGGTTTGTAGAAAATCTGATGGGAGTAACAGTAATTATAACTGCTCATATATCTATGATGGATTGTATTCAGTGGACAACATGACCCAAGAAAGGGGACAATTTGGAAAACTCGTGTTCAAGTTTATAATGAATAGAATTTTAGACCAACCCATGTGTGTTTCCCCTAAGGATGTGGTCATGGAAGGGGGATTCACAAGTTTTACTCAAAAGAAGAGACAGAAATCCATTGGTCATGTAGCCAGAAAAGATGTTGTTCGTGTAAATGATGTTTCAGAGGGCAAAGAAAAGTTTCCTATTCGGGTGGTGACACCAACAGATTGTGTTCAGATATCTCCATCTTTTGATTACGTAGTCGATATGGTTTATCCTGAGAGGTTCAAGCAGCCAATTCTATATGGCTGTGATTGTTCAGATGCATGTGTTGATTATTTAAAATGTGCTTGCATTATTAAGAATGGTGGAGCAATGCCATATGACTGTAATAAAAGACTTGCTTCGCCCATGAAATCATCTCTTATATATGAGTGTGGCCCTTCTTGCAAGTGCTCCTTATCATGCATCAACCGAATTAGTCAGTGTGGTATTCAGTTCCAATTAGAAATATTCAAAACAGAATTGAAGGGTTGGGGTGTTAGACCACGCACTTTCATTCCATCTGGAAGCTTTGTGTGTGAGTTCATCGGGGAAGTCCATCGTAATAGAAAATCTGGATCAAGGCTAGACGTGGATGACTGTACATTTGAGATAGGTGCTGGCAAGGGCTTCATAGATGCAACAAGACGTGGAAACATTGGAAGATTTATAAATCATAGTTGTTCTCCTAATCTGTGTGTCAAAGATATCATGTTGGGAGTACTTGTTGCTATTGTGGTTCACCGGAATGCAATAAACAGGTTTACATTTGAAGATGTTGGAATTATAGGTACACAGATTGAAAGATTAAATCTTGAAGGAGAAATTGAAAATGATAGCGATGGTACTCAAACTCAAACGGGCGTATTAGCTACAATGAAATCAAGAGATATATCTGCAGAAGAACTTGGAGCCAAAAAGGTTTTTACCAAACCTAAGACATTTCAGTGA 1671 0.3878 MAASKLTGRKHEEGTCQKRPFSSSAENLKEVSLKHKKVQQTLQTFRDLSSKLLCQYETDQLGHLKAKTKALMEAAMLMKRKHQWENTKKRVGHVEGIEVGDGFQYRTELNVIGLHHQFSSGIDYMGKYENSLATSIVVTDRYANVIKSGGCLIYIGHGGNPNVRSDVLPHDQKLEGGNLALRNSMIARSPVRVILKVCRKSDGSNSNYNCSYIYDGLYSVDNMTQERGQFGKLVFKFIMNRILDQPMCVSPKDVVMEGGFTSFTQKKRQKSIGHVARKDVVRVNDVSEGKEKFPIRVVTPTDCVQISPSFDYVVDMVYPERFKQPILYGCDCSDACVDYLKCACIIKNGGAMPYDCNKRLASPMKSSLIYECGPSCKCSLSCINRISQCGIQFQLEIFKTELKGWGVRPRTFIPSGSFVCEFIGEVHRNRKSGSRLDVDDCTFEIGAGKGFIDATRRGNIGRFINHSCSPNLCVKDIMLGVLVAIVVHRNAINRFTFEDVGIIGTQIERLNLEGEIENDSDGTQTQTGVLATMKSRDISAEELGAKKVFTKPKTFQ* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00261 556 SMART set_7 393 502 IPR001214 GO:0005515
Rops6g00261 556 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 22 475 - -
Rops6g00261 556 SUPERFAMILY SET domain 271 476 IPR046341 -
Rops6g00261 556 MobiDBLite consensus disorder prediction 1 17 - -
Rops6g00261 556 SUPERFAMILY PUA domain-like 74 247 IPR015947 -
Rops6g00261 556 ProSiteProfiles Pre-SET domain profile. 328 390 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g00261 556 SMART G9a_1 87 245 IPR003105 -
Rops6g00261 556 Pfam SAD/SRA domain 91 245 IPR003105 -
Rops6g00261 556 Pfam Pre-SET motif 287 385 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops6g00261 556 ProSiteProfiles SET domain profile. 393 521 IPR001214 GO:0005515
Rops6g00261 556 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g00261 556 Pfam SET domain 404 475 IPR001214 GO:0005515
Rops6g00261 556 ProSiteProfiles YDG domain profile. 92 241 IPR003105 -
Rops6g00261 556 Gene3D - 73 262 IPR036987 -
Rops6g00261 556 Gene3D SET domain 263 492 IPR046341 -
Rops6g00261 556 SMART preset_2 283 377 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00261 Rops-Chr6 6221820 6227080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00261 48 478 Su(var)3-9 homologs AT1G73100 34.968 3.40e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g00261 SAD_SRA 1.1e-38 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00261 - - gmx:100807574 599.742