Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00253 ATGCAAACCTTTGAATCAAACTTCACTTTTTGCACCTCAAACATCCTAGAAGCCTCACATTCACATCCATTGCAAAGTTCAATTTCAGAAAGCCTCCTCAGTTCTGATATCAGTATCAATGATTACTTGCTACCCCAAGAAGTTCCCATGAACATGCCAAATCATAATAATTCTTATTCCAACCAAACCCACCTTCAAATTTCTCAAACCTCTTTCTCCAAGCCTCCAAGATCCTCAAATCTAAGCAACCGCAGACCTTCCTTGAACATCACAATCCCTTCCACAAACTCAGGTCTCACAAAAGCTCTCTCACAACACAAGGAAACTACCACTTATATTCAGAATTCTTCTTCTTCAAACAGTGATCACAACACCAAAGAGGACAAGCACTACAGAGGTGTTAGAAGAAGACCATGGGGAAAGTTTGCTGCAGAGATAAGAGACCCCAATAGAAAAGGCTCAAGGGCATGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAAGCTTATGATAGAGCTGCTTTCAAGATGAGAGGAAGCAAAGCTATACTGAATTTCCCTCTAGAAGCTGGTGATTCTGTTGAAGAACCAGTTTCTAGCTCCATCAAGGTTGGTGAGAAAAGGAGAAGAGATGAAGAGAGTGAAGAAAAAGGAGTCAACTGTGTGGAGAGTAATAATAATAATAATAAGCTGGTGAAGAAAGAAGAGAGTTCTCCAAAAGGGGTTTCAGCAGCAACAATTGGCCCTTTGACTCCCTCATGTTGGAAAGGATTTTGGGACACTGAAGTTATGGGAACTATCTTTAGTGTGCCTCCTTTGTCACCCTTATCTCCACTCCTGGTTGTTTGA 852 0.4155 MQTFESNFTFCTSNILEASHSHPLQSSISESLLSSDISINDYLLPQEVPMNMPNHNNSYSNQTHLQISQTSFSKPPRSSNLSNRRPSLNITIPSTNSGLTKALSQHKETTTYIQNSSSSNSDHNTKEDKHYRGVRRRPWGKFAAEIRDPNRKGSRAWLGTFDTAIEAAKAYDRAAFKMRGSKAILNFPLEAGDSVEEPVSSSIKVGEKRRRDEESEEKGVNCVESNNNNNKLVKKEESSPKGVSAATIGPLTPSCWKGFWDTEVMGTIFSVPPLSPLSPLLVV* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00253 283 MobiDBLite consensus disorder prediction 50 121 - -
Rops6g00253 283 ProSiteProfiles AP2/ERF domain profile. 130 188 IPR001471 GO:0003700|GO:0006355
Rops6g00253 283 SMART rav1_2 130 194 IPR001471 GO:0003700|GO:0006355
Rops6g00253 283 PANTHER DNA-BINDING DOMAIN 82 225 IPR044808 GO:0003700|GO:0009873
Rops6g00253 283 MobiDBLite consensus disorder prediction 48 132 - -
Rops6g00253 283 Pfam AP2 domain 130 180 IPR001471 GO:0003700|GO:0006355
Rops6g00253 283 PRINTS Ethylene responsive element binding protein signature 170 190 IPR001471 GO:0003700|GO:0006355
Rops6g00253 283 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Rops6g00253 283 FunFam Ethylene-responsive transcription factor 2 129 190 - -
Rops6g00253 283 Gene3D AP2/ERF domain 129 190 IPR036955 GO:0003700|GO:0006355
Rops6g00253 283 MobiDBLite consensus disorder prediction 196 245 - -
Rops6g00253 283 CDD AP2 129 188 IPR001471 GO:0003700|GO:0006355
Rops6g00253 283 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Rops6g00253 283 MobiDBLite consensus disorder prediction 202 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00253 Rops-Chr6 6047050 6048311 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00253 86 280 AP2-EREBP Transcription Factor Family AT5G51190 49.254 7.04e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g00253 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00253 K09286 - gmx:100795866 271.166