Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00250 ATGACAACATCAGAAGAAACTTCAAACTTGGATTTGATAAGCCACCATCTCTTAGGTGATATCTCAGATTCCTTCCTCACAAATCTCCATCCTGTAAAACTTGAAGACCCTTCACCAGAATTTGATTTCAGTTCATATATTTCAGACAATTGTGGCAACTTCTGCACTTTCTTTGCAGGCTATGATTTGGTAGCAGATATGGAGTTTGTTGATCACAGTTCTCCTCCAAAGGTCTCAAAGTCCACAGGAACAAGCCCTTCTAAGGAAACCAAGAAATGCAATTCCCCTGAACCAATTATGGTGTTAGAGAAGACAAAGAAAGTGGTGTATGATGAGGCAAGGCGTTATAGAGGAGTGAGGAGAAGGCCATGGGGTAAGTTTGTTGCTGAGATTCGTGACCCAACAAGGAAAGGGACCAAGGTTTGGTTAGGAACATTTGACAGTGAAATTGATGCTGCAAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAAGCCATATTGAACTTCCCTTTGGAGGCAGGTGAGTCTGATCCAAAACCAAACAGTTGTGGTAGGAAAAGGAGAAGAGAGAGTGGATTGAAGCTAACAGGAGTTCAAGTTTAA 612 0.4199 MTTSEETSNLDLISHHLLGDISDSFLTNLHPVKLEDPSPEFDFSSYISDNCGNFCTFFAGYDLVADMEFVDHSSPPKVSKSTGTSPSKETKKCNSPEPIMVLEKTKKVVYDEARRYRGVRRRPWGKFVAEIRDPTRKGTKVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNSCGRKRRRESGLKLTGVQV* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00250 203 Gene3D AP2/ERF domain 114 175 IPR036955 GO:0003700|GO:0006355
Rops6g00250 203 MobiDBLite consensus disorder prediction 182 196 - -
Rops6g00250 203 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Rops6g00250 203 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700|GO:0006355
Rops6g00250 203 SUPERFAMILY DNA-binding domain 115 175 IPR016177 GO:0003677
Rops6g00250 203 PANTHER DNA-BINDING DOMAIN 89 180 IPR044808 GO:0003700|GO:0009873
Rops6g00250 203 MobiDBLite consensus disorder prediction 75 92 - -
Rops6g00250 203 MobiDBLite consensus disorder prediction 174 203 - -
Rops6g00250 203 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Rops6g00250 203 PRINTS Ethylene responsive element binding protein signature 155 175 IPR001471 GO:0003700|GO:0006355
Rops6g00250 203 FunFam Ethylene-responsive transcription factor 2 114 175 - -
Rops6g00250 203 CDD AP2 123 173 IPR001471 GO:0003700|GO:0006355
Rops6g00250 203 SMART rav1_2 115 179 IPR001471 GO:0003700|GO:0006355
Rops6g00250 203 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00250 Rops-Chr6 6020538 6021149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00250 1 192 AP2-EREBP Transcription Factor Family AT5G07580 40.191 6.86e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g00250 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00250 - - ccaj:109813158 295.434