Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00249 ATGACAACATCAGAAGAAACTTCAAACTTGGATTTGATAAGCCACCATCTCTTAGACAATAGCATCAGCTTCTGCGCTTTCCTTGAAGGCTATGATTTGGTAGCAGATATGGAGTTTGTTGATCAAAGTTCTCCTCCAAAGGTCTTGAAGTCCACAGGAACAAGCCCTTCTAAGGAAACCAAGAAATGCAATTCCCCTGAACCAATTATGGTGTTAGAGAAGACAAAGAAAGTGGTGTATGATGAGGCAAGGCGTTATAGAGGAGTGAGGAGAAGGCCATGGGGTAAGTTTGCTGCTGAGATTCGTGACCCAACAAGGAAAGGGACCAGGGTTTGGTTAGGAACATTTGACAGTGAAATTGATGCTGCAAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAAGCCATATTGAACTTCCCTTTGGAGGCAGGTGTGTCTGATCCAAAACCAAATAGTTGTGGTAGGAAAAGGAGAAGAGAGAGTGAATTGAAGCTAACAGGAGTTCAAGTTTAA 522 0.4291 MTTSEETSNLDLISHHLLDNSISFCAFLEGYDLVADMEFVDQSSPPKVLKSTGTSPSKETKKCNSPEPIMVLEKTKKVVYDEARRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGVSDPKPNSCGRKRRRESELKLTGVQV* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00249 173 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Rops6g00249 173 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Rops6g00249 173 MobiDBLite consensus disorder prediction 148 173 - -
Rops6g00249 173 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Rops6g00249 173 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Rops6g00249 173 CDD AP2 93 143 IPR001471 GO:0003700|GO:0006355
Rops6g00249 173 PANTHER DNA-BINDING DOMAIN 62 153 IPR044808 GO:0003700|GO:0009873
Rops6g00249 173 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677
Rops6g00249 173 PRINTS Ethylene responsive element binding protein signature 125 145 IPR001471 GO:0003700|GO:0006355
Rops6g00249 173 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Rops6g00249 173 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Rops6g00249 173 MobiDBLite consensus disorder prediction 44 64 - -
Rops6g00249 173 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00249 Rops-Chr6 6003487 6004187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00249 1 162 AP2-EREBP Transcription Factor Family AT5G07580 41.489 1.55e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g00249 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00249 - - ccaj:109813158 241.891