Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00239 ATGGGGAACAATTGTGTTGGTCCAAGCATTTCGAAAAATGGTATTATTCAATCATTTTCTGCAGCATTTTGGCGGACCCAATCGCCTGAAGGATCAGTGTCTAATAGAGAATCTGTAAATGAGGGAACAACTAATGAGCCTGAATCACCTTTGCCTGTTCAAAGCAAACCTCCTGAGCAGATAACTATGCCAAAACCAGGACCAAAGCAAGAGACAAAGTCAGAAATTGAACCGGAAAAGGAGAAGAAGAAACACAGGAAACCTTCAGTGAAGAGAGTTTCTAGTGCAGGACTTCGTGTTGATTCCGTGTTACAGAGAGAAACGGATAATTTCAAGGAGTTCTTCACTTTGGGAAGAAAACTTGGACAGGGTCAGTTTGGGACAACATTCTTGTGTGTGGAGAAGGCAACAGGACATGAGTATGCCTGTAAATCTATTGCAAAGAGGAAGCTGGTGACTGACGAGGATGTTGAGGATGTGAGAAGGGAAATTCAGATAATGCACCATTTGTCTGGGCATCCTAATGTTATATCCATCAAAGGTGCTTATGAGGATGGAGTGGCTGTTCATGTTGTGATGGAATTATGTGCAGGTGGTGAGCTTTTTGATAGGATCATTCAGCGTGGACATTATACCGAAAGACAGGCTGCTGAACTTACTAGGACTATAGTTGGGGTTGTGGAAGCTTGTCATTCTCTAGGTGTGATGCACAGAGACCTTAAACCTGAGAATTTTCTCTTTGTCAATCAACATGAGGATGCACTTCTCAAAACCATTGACTTTGGATTATCTGTGTTCTTTAAGCCAGGTGATATATTTACTGATGTGGTTGGCAGCCCATATTATGTTGCCCCAGAAGTTTTGCGGAAGCGTTATGGTCCTGAAGCAGATGTTTGGAGTGCTGGAGTTATCCTTTACATTATTTTGAGTGGAGTACCTCCATTTTGGGCTGAGAACGAACAAGGGATATTTGAACAGGTTCTGCGTGGTGATCTTGACTTCTCTTCAGATCCCTGGCCTGGAATTTCTGAAAGTGCAAAAGATTTAGTAAGGAAAATGCTTGTTCGCGACCCTAGAAGGCGGATGACTGCACATCAAGTGTTATGTCATCCTTGGATTCAAGTTGATGGTGTAGCGCCTGACAAGCCACTTGATTCTGCCGTATTAAGTCGCTTGAAGCAATTTTCTGCTATGAACAAGCTCAAAAAAATGGCTCTTATTGTCATCGCAGAGAGTTTATCTGAAGAAGAAATAGCTGGCTTAAAAGAAATGTTCAAGATGATAGATGCAGACAACAGTGGTCAAATCACTTTTGAAGAACTTAAAGCTGGTTTGAAAAGAGTGGGTGCTAATCTTAAGGAGTCTGAAATTTATGATTTAATGCAAGCGGCTGATATAGATAACAGTGGGACAATTGATTATGGCGAGTTCCTTGCTGCAACATTGCATCTTAACAAGATTGAAAGGGAAGATCATCTCTTTGCAGCCTTTTCTTACTTTGATAAAGATGGAAGTGGCTATATTACTCAAGAAGAACTTCAACAGGCTTGTGATGAGTTTGGCATAAAAGATGTCCGCTTGGAAGAGATAATCAAGGAAATTGATGAAGATAATGATGGACGCATAGATTATAATGAGTTTGTGGCTATGATGCAGAAAGGAAATCTTCCTGTGGCTGGTAGGAAAGGCCTAGAAAATAACTTCAGCATTCGTTTCAGGGAGGCATTAAAATTGTAG 1737 0.4116 MGNNCVGPSISKNGIIQSFSAAFWRTQSPEGSVSNRESVNEGTTNEPESPLPVQSKPPEQITMPKPGPKQETKSEIEPEKEKKKHRKPSVKRVSSAGLRVDSVLQRETDNFKEFFTLGRKLGQGQFGTTFLCVEKATGHEYACKSIAKRKLVTDEDVEDVRREIQIMHHLSGHPNVISIKGAYEDGVAVHVVMELCAGGELFDRIIQRGHYTERQAAELTRTIVGVVEACHSLGVMHRDLKPENFLFVNQHEDALLKTIDFGLSVFFKPGDIFTDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYIILSGVPPFWAENEQGIFEQVLRGDLDFSSDPWPGISESAKDLVRKMLVRDPRRRMTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAESLSEEEIAGLKEMFKMIDADNSGQITFEELKAGLKRVGANLKESEIYDLMQAADIDNSGTIDYGEFLAATLHLNKIEREDHLFAAFSYFDKDGSGYITQEELQQACDEFGIKDVRLEEIIKEIDEDNDGRIDYNEFVAMMQKGNLPVAGRKGLENNFSIRFREALKL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00239 578 Gene3D - 398 557 - -
Rops6g00239 578 FunFam Calcium-dependent protein kinase 1 117 200 - -
Rops6g00239 578 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Rops6g00239 578 CDD EFh 492 552 IPR002048 GO:0005509
Rops6g00239 578 Pfam EF-hand domain pair 491 552 IPR002048 GO:0005509
Rops6g00239 578 Pfam EF-hand domain pair 421 481 IPR002048 GO:0005509
Rops6g00239 578 PANTHER SERINE/THREONINE-PROTEIN KINASE 105 547 - -
Rops6g00239 578 MobiDBLite consensus disorder prediction 26 94 - -
Rops6g00239 578 Gene3D Phosphorylase Kinase; domain 1 117 200 - -
Rops6g00239 578 SMART serkin_6 115 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00239 578 SMART efh_1 492 520 IPR002048 GO:0005509
Rops6g00239 578 SMART efh_1 420 448 IPR002048 GO:0005509
Rops6g00239 578 SMART efh_1 526 554 IPR002048 GO:0005509
Rops6g00239 578 SMART efh_1 456 484 IPR002048 GO:0005509
Rops6g00239 578 ProSitePatterns Protein kinases ATP-binding region signature. 121 148 IPR017441 GO:0005524
Rops6g00239 578 SUPERFAMILY EF-hand 413 553 IPR011992 -
Rops6g00239 578 ProSitePatterns EF-hand calcium-binding domain. 535 547 IPR018247 -
Rops6g00239 578 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Rops6g00239 578 Gene3D Transferase(Phosphotransferase) domain 1 201 397 - -
Rops6g00239 578 MobiDBLite consensus disorder prediction 70 84 - -
Rops6g00239 578 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Rops6g00239 578 CDD STKc_CAMK 114 372 - -
Rops6g00239 578 ProSiteProfiles EF-hand calcium-binding domain profile. 526 557 IPR002048 GO:0005509
Rops6g00239 578 FunFam Calcium-dependent protein kinase SK5 201 385 - -
Rops6g00239 578 Pfam Protein kinase domain 116 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00239 578 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Rops6g00239 578 MobiDBLite consensus disorder prediction 26 50 - -
Rops6g00239 578 CDD EFh 421 480 IPR002048 GO:0005509
Rops6g00239 578 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Rops6g00239 578 FunFam Calcium-dependent protein kinase 1 381 555 - -
Rops6g00239 578 SUPERFAMILY Protein kinase-like (PK-like) 114 374 IPR011009 -
Rops6g00239 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Rops6g00239 578 ProSiteProfiles EF-hand calcium-binding domain profile. 488 523 IPR002048 GO:0005509
Rops6g00239 578 ProSiteProfiles Protein kinase domain profile. 115 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00239 Rops-Chr6 5808218 5831949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00239 1 578 EF-hand Containing Proteins AT5G04870 76.375 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops6g00239 Pkinase 4.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00239 K13412 - gmx:100797449 1046.19